PMBio / bicycleLinks
Bicycle: Intervention-Based Causal Discovery with Cycles
☆36Updated 8 months ago
Alternatives and similar repositories for bicycle
Users that are interested in bicycle are comparing it to the libraries listed below
Sorting:
- ☆66Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 6 months ago
- Multi-omic single-cell optimal transport tools☆185Updated last week
- Learning cell communication from spatial graphs of cells☆114Updated 2 years ago
- Learn single-cell dynamics using neural differential equations☆55Updated last month
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆156Updated last year
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆72Updated 4 months ago
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆41Updated last year
- A simulator for single-cell expression data guided by gene regulatory networks☆73Updated last year
- Git Repo for simulating Boolean Models☆36Updated 3 months ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆43Updated 3 years ago
- Deep exponential families for single-cell data.☆20Updated 3 weeks ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 4 months ago
- Multimodal Data (.h5mu) implementation for Python☆107Updated this week
- Single-cell multi-omics integration using Optimal Transport☆50Updated 5 months ago
- netZooPy is a network biology package implemented in Python.☆94Updated 3 weeks ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆19Updated last month
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆26Updated 10 months ago
- Tissue reassembly with generative AI☆24Updated 8 months ago
- Simulating single-cell data using gene regulatory networks 📠☆78Updated last year
- Functional and Learnable Cell dynamicS☆21Updated 8 months ago
- Distributed single-cell data analysis.☆35Updated last week
- 🏃 The go-to single-cell Foundation Model☆135Updated last month
- federated learning with tabular learning☆25Updated 11 months ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated 3 months ago
- Biological Network Integration using Convolutions☆63Updated 2 years ago
- factor models for omics data☆32Updated this week
- spatial transcriptome, single cell☆73Updated 2 years ago