Bicycle: Intervention-Based Causal Discovery with Cycles
☆36Jun 3, 2025Updated 9 months ago
Alternatives and similar repositories for bicycle
Users that are interested in bicycle are comparing it to the libraries listed below
Sorting:
- ☆41Jun 16, 2025Updated 9 months ago
- Miscellaneous genomics tools and data structures☆15Jul 26, 2024Updated last year
- Diffusion model for gene regulatory network inference.☆28Updated this week
- Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…☆19Jul 3, 2024Updated last year
- This is a repository of the scLinaX R package developed in the Tomofuji et al (Quantification of escape from X chromosome inactivation wi…☆10Sep 12, 2025Updated 6 months ago
- G Square Conditional Independence Test☆11Mar 7, 2017Updated 9 years ago
- COMUNET: a tool to explore and visualize intercellular communication☆12Apr 15, 2020Updated 5 years ago
- This is the code for the paper Jacobian-based Causal Discovery with Nonlinear ICA, demonstrating how identifiable representations (partic…☆22Sep 5, 2024Updated last year
- Using color jitter to distinguish individuals in categorically colored visualizations☆11Apr 17, 2024Updated last year
- A simulator for single-cell expression data guided by gene regulatory networks☆75May 8, 2024Updated last year
- Finding gene expression states in scRNA-seq data☆50Mar 22, 2024Updated last year
- Python phylogeny tracker for in silico evolution experiments☆11Sep 4, 2025Updated 6 months ago
- Statistical Computing☆11Jan 24, 2025Updated last year
- Fast motif matching in R☆46Jan 24, 2024Updated 2 years ago
- Controlling 3D plots with an IMU☆15Sep 21, 2022Updated 3 years ago
- Analysis of JOSS data and statistics☆13Mar 11, 2026Updated last week
- Repository to host data standards for the ALIFE community.☆16Apr 24, 2023Updated 2 years ago
- Python Monte Carlo Scenario Generator☆14Dec 30, 2025Updated 2 months ago
- Base for the Viral Genomics and Bioinformatics Repository☆17Jul 5, 2024Updated last year
- ☆58Jun 11, 2025Updated 9 months ago
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Mar 1, 2023Updated 3 years ago
- A wrapper around the sleepwalk package that allows for interactive knn visualizations of an embedding.☆22May 8, 2024Updated last year
- ☆22Feb 25, 2026Updated 3 weeks ago
- Next generation Lasersaur control app.☆16Jun 21, 2022Updated 3 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆25Feb 26, 2026Updated 3 weeks ago
- 2016 3D graphs for Oculus Rift DK2 and Leap Motion support. Built before Oculus Touch released.☆18Apr 26, 2018Updated 7 years ago
- Evolvable Hardware: Begin using the BitstreamEvolution Open Source Toolkit☆16Mar 2, 2026Updated 2 weeks ago
- We organize papers related to causal that published on top conferences recently. (因果领域论文分类汇总)☆99Mar 29, 2023Updated 2 years ago
- ** Sferes2 module ** MAP-Elites module for Sferes2☆21May 30, 2019Updated 6 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆43May 25, 2024Updated last year
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆16Updated this week
- Cuda Accelerated Satellite Propagator☆33Jul 15, 2025Updated 8 months ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆30Mar 1, 2026Updated 3 weeks ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Apr 28, 2025Updated 10 months ago
- Materials accompanying the upstrap paper☆12Oct 19, 2020Updated 5 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated 10 months ago
- Official repository for the autoPET III challenge.☆11Jan 8, 2026Updated 2 months ago
- ☆12May 29, 2024Updated last year