PMBio / bicycle
Bicycle: Intervention-Based Causal Discovery with Cycles
☆31Updated 6 months ago
Alternatives and similar repositories for bicycle:
Users that are interested in bicycle are comparing it to the libraries listed below
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆23Updated last month
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆34Updated this week
- Single-cell multi-omics integration using Optimal Transport☆41Updated 4 months ago
- ☆57Updated last year
- ☆27Updated 3 weeks ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆21Updated last month
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆36Updated 7 months ago
- ☆19Updated last year
- A simulator for single-cell expression data guided by gene regulatory networks☆56Updated 8 months ago
- Biological Network Integration using Convolutions☆60Updated last year
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆124Updated 2 months ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆72Updated last year
- Quantifying experimental perturbations at single cell resolution☆106Updated 3 months ago
- Deep exponential families for single-cell data.☆21Updated 2 months ago
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆28Updated 10 months ago
- a dataloader to work with large single cell datasets from lamindb☆20Updated this week
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆51Updated 6 years ago
- ☆16Updated 6 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆25Updated 2 years ago
- Unified knowledge-driven network inference from omics data☆29Updated this week
- Create PyTorch Datasets from AnnData☆20Updated 3 months ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆37Updated last year
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 6 months ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated last year
- ☆12Updated 4 months ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆24Updated last year
- spatial transcriptome, single cell☆66Updated last year
- Learning cell communication from spatial graphs of cells☆104Updated last year
- Distributed single-cell data analysis.☆26Updated this week
- Git Repo for simulating Boolean Models☆33Updated 7 months ago