PMBio / bicycleLinks
Bicycle: Intervention-Based Causal Discovery with Cycles
☆36Updated 6 months ago
Alternatives and similar repositories for bicycle
Users that are interested in bicycle are comparing it to the libraries listed below
Sorting:
- ☆63Updated 2 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- ☆94Updated last month
- A simulator for single-cell expression data guided by gene regulatory networks☆70Updated last year
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆151Updated last year
- Single-cell multi-omics integration using Optimal Transport☆48Updated 4 months ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆71Updated 2 months ago
- Deep exponential families for single-cell data.☆20Updated 2 months ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated last month
- Git Repo for simulating Boolean Models☆36Updated last month
- A Python-based compendium of GPU-optimized aging clocks.☆115Updated 2 weeks ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 2 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Machine learning tools for biomarker analysis☆72Updated last week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 5 months ago
- Tissue reassembly with generative AI☆21Updated 6 months ago
- Benchmark agents on BioML tasks☆60Updated 3 months ago
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆41Updated last year
- Multimodal Data (.h5mu) implementation for Python☆102Updated last month
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆25Updated 8 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆96Updated 6 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆57Updated 6 months ago
- Biological Network Integration using Convolutions☆63Updated last year
- netZooPy is a network biology package implemented in Python.☆93Updated 5 months ago
- a dataloader to work with large single cell datasets from lamindb☆30Updated last week
- Spatially aware dimension reduction for spatial transcriptomics.☆61Updated 8 months ago
- ☆34Updated 7 months ago
- ☆38Updated last month