Alternatives and similar repositories for OSCA

Users that are interested in OSCA are comparing it to the libraries listed below

• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆97Updated 3 years ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated this week
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆96Updated 10 months ago
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆193Updated 4 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆132Updated 9 months ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆122Updated 5 years ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆91Updated 6 months ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆110Updated last week
• dviraran / xCell
  Cell types enrichment analysis
  ☆198Updated last year
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆197Updated 3 months ago
• 10XGenomics / loupeR
  Convert Seurat objects to 10x Genomics Loupe files.
  ☆134Updated last month
• huayc09 / SeuratExtend
  ☆163Updated last week
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆143Updated 5 months ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆261Updated 5 months ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆193Updated last month
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆68Updated last year
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆96Updated 2 years ago
• drisso / bioc2016singlecell
  Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor
  ☆79Updated 8 years ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆186Updated last week
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 8 months ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆187Updated 9 months ago
• rezakj / iCellR
  Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…
  ☆122Updated last year
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆223Updated 3 weeks ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆63Updated last year
• rcastelo / GSVA
  Gene set variation analysis
  ☆224Updated 4 months ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆206Updated 2 weeks ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆124Updated 4 months ago
• Bioconductor / OrchestratingSingleCellAnalysis
  Content for the OSCA Book.
  ☆66Updated 2 years ago
• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆74Updated 4 months ago