OSCA-source / OSCA
The package wrapping the book, for deployment via the Bioconductor build system.
☆83Updated 4 months ago
Alternatives and similar repositories for OSCA:
Users that are interested in OSCA are comparing it to the libraries listed below
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆119Updated 4 years ago
- Interactively analyze single cell genomic data☆182Updated last month
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…☆142Updated this week
- Easy single cell analysis platform for enrichment☆165Updated this week
- An R interface to enrichR☆90Updated last month
- Clone of the Bioconductor repository for the SingleR package.☆185Updated last month
- Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…☆123Updated 8 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆178Updated last month
- Multi-sample multi-group scRNA-seq analysis tools☆182Updated last month
- Mixed-effect model to test differences in cell type proportions from single-cell data, in R☆99Updated last week
- R package to infer biological activities from omics data using a collection of methods.☆231Updated last week
- A Shiny web app for mapping datasets using Seurat v4☆122Updated 4 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆92Updated 5 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆120Updated this week
- ☆127Updated 3 weeks ago
- Easily install and load packages from the tidyomcis ecosystem☆64Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated 2 years ago
- Gene set variation analysis☆212Updated this week
- Scaling Single Cell Analysis to Millions of Cells☆186Updated this week
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 3 months ago
- Content for the OSCA Book.☆66Updated 2 years ago
- Shiny Interactive Web Apps for Single-Cell Data☆173Updated last year
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆81Updated last week
- ☆59Updated 10 months ago
- ☆61Updated last year
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆197Updated 5 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆247Updated this week
- Cell types enrichment analysis☆194Updated 9 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆103Updated last year
- Simplify functional enrichment results☆113Updated 6 months ago