kdpsingh / clinspacy
Clinical Natural Language Processing using spaCy, scispacy, and medspacy
☆100Updated last year
Alternatives and similar repositories for clinspacy:
Users that are interested in clinspacy are comparing it to the libraries listed below
- An R package for performing various cohort diagnostics.☆44Updated last week
- ☆53Updated 5 years ago
- ☆64Updated 4 years ago
- An R package for generating features (covariates) for a cohort using data in the Common Data Model.☆62Updated 2 weeks ago
- init☆12Updated 5 months ago
- Python package for machine learning for healthcare using a OMOP common data model☆108Updated last year
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆65Updated 9 months ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- ☆22Updated 2 years ago
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆14Updated 2 years ago
- ARCHIVED Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical…☆55Updated 2 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.☆85Updated 3 weeks ago
- An R package for evaluating phenotype algorithms.☆17Updated 6 months ago
- A Shiny tool for performing manual review of electronic medical records☆24Updated last year
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 5 years ago
- A Serverless Text Annotation Tool for Corpus Development☆55Updated 2 months ago
- ☆98Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated 11 months ago
- Sample code that demonstrates the use of the NCBO REST services☆44Updated last year
- ☆38Updated 3 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆67Updated 2 weeks ago
- ☆12Updated 3 months ago
- ACT COVID Ontology☆15Updated 3 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Updated 10 months ago
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.☆32Updated 3 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 6 months ago