Alternatives and similar repositories for clinspacy:

Users that are interested in clinspacy are comparing it to the libraries listed below

• beamandrew / cui2vec
  ☆52Updated 4 years ago
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆28Updated 7 years ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆64Updated 5 months ago
• jianlins / PyRuSH
  init
  ☆12Updated last month
• lisavirginia / clinical-abbreviations
  ☆64Updated 3 years ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆106Updated last year
• OHDSI / CohortDiagnostics
  An R package for performing various cohort diagnostics.
  ☆42Updated last week
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆30Updated 7 months ago
• hibaahsan / MIMIC-SBDH
  Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs
  ☆13Updated 2 years ago
• gmichalo / UmlsBERT
  ☆96Updated 2 years ago
• asappresearch / clip
  ☆28Updated 3 years ago
• som-shahlab / ehr-rwe
  Weak supervision methods for extracting real world evidence from EHRs
  ☆33Updated 4 years ago
• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆17Updated 3 months ago
• OHDSI / FeatureExtraction
  An R package for generating features (covariates) for a cohort using data in the Common Data Model.
  ☆61Updated 3 months ago
• clinicalml / prancer
  Platform enabling Rapid Annotation for Clinical Entity Recognition
  ☆50Updated 2 years ago
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 4 years ago
• Tian312 / PICO_Parser
  A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
  ☆45Updated 4 years ago
• Melbourne-BMDS / mimic34md2020_materials
  ☆22Updated 2 years ago
• uf-hobi-informatics-lab / SDoH_SODA
  ☆17Updated 9 months ago
• ropensci-archive / cleanEHR
  ARCHIVED Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical…
  ☆55Updated 2 years ago
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆129Updated 10 months ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• thewileylab / ReviewR
  A Shiny tool for performing manual review of electronic medical records
  ☆24Updated last year
• OHDSI / CohortMethod
  An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
  ☆82Updated 2 months ago
• kormilitzin / med7
  ☆210Updated last month
• p2 / ClinicalTrialsNLP
  Classes for ClinicalTrials.gov related projects
  ☆48Updated 5 years ago
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆41Updated last year
• simonlevine / clinical-longformer
  ☆38Updated 2 years ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆64Updated 2 months ago
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆32Updated last year