kdpsingh / clinspacy
Clinical Natural Language Processing using spaCy, scispacy, and medspacy
☆96Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for clinspacy
- ☆51Updated 4 years ago
- ☆63Updated 3 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆64Updated 3 months ago
- Python package for machine learning for healthcare using a OMOP common data model☆104Updated last year
- An R package for performing various cohort diagnostics.☆41Updated 2 weeks ago
- init☆11Updated 2 months ago
- An R package for generating features (covariates) for a cohort using data in the Common Data Model.☆61Updated last month
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆12Updated 2 years ago
- ☆27Updated 3 years ago
- An R package for evaluating phenotype algorithms.☆17Updated last month
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- ☆95Updated 2 years ago
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆20Updated 5 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆29Updated 6 months ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆27Updated 7 years ago
- ARCHIVED Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical…☆55Updated 2 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆44Updated 4 years ago
- Sample code that demonstrates the use of the NCBO REST services☆40Updated 10 months ago
- Mapping the MIMIC-III database to the OMOP schema☆128Updated 8 months ago
- ☆38Updated 2 years ago
- A Serverless Text Annotation Tool for Corpus Development☆54Updated last month
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated last year
- ☆98Updated last year
- ☆21Updated last year
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 4 years ago
- Semantic query and text mining tool☆22Updated last year
- A Shiny tool for performing manual review of electronic medical records☆24Updated last year
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆72Updated last week
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆22Updated 4 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆64Updated this week