kdpsingh / clinspacyLinks
Clinical Natural Language Processing using spaCy, scispacy, and medspacy
☆100Updated last year
Alternatives and similar repositories for clinspacy
Users that are interested in clinspacy are comparing it to the libraries listed below
Sorting:
- ☆55Updated 5 years ago
- An R package for performing various cohort diagnostics.☆46Updated last week
- ☆64Updated 4 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- Python package for machine learning for healthcare using a OMOP common data model☆108Updated 2 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆68Updated this week
- An R package for evaluating phenotype algorithms.☆18Updated 8 months ago
- Sample code that demonstrates the use of the NCBO REST services☆44Updated last year
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- ☆22Updated 2 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆15Updated 3 years ago
- A Serverless Text Annotation Tool for Corpus Development☆56Updated 4 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- An R package for generating features (covariates) for a cohort using data in the Common Data Model.☆63Updated last week
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated last month
- ARCHIVED Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical…☆55Updated 2 years ago
- init☆12Updated 6 months ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆81Updated this week
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆63Updated 3 weeks ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- HDR UK National Phenotype Library☆22Updated 2 years ago
- ☆29Updated 3 years ago
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆20Updated 6 years ago
- ☆98Updated last year
- ☆98Updated 3 years ago
- ACT COVID Ontology☆15Updated 3 years ago
- General tutorials for the setup and use of MedCAT.☆37Updated last month
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year