nlpie-research / umls-to-snomed-icd10-mapperLinks
UMLS to SNOMED CT and ICD-10 mapping tool: A Python script for generating JSON files containing mappings between UMLS CUIs and SNOMED CT or ICD-10 codes using the UMLS Metathesaurus. Supports exact match, broad relations, and parent-child hierarchy mapping methods.
☆15Updated 2 years ago
Alternatives and similar repositories for umls-to-snomed-icd10-mapper
Users that are interested in umls-to-snomed-icd10-mapper are comparing it to the libraries listed below
Sorting:
- General tutorials for the setup and use of MedCAT.☆41Updated 7 months ago
- Winners of the SNOMED CT Entity Linking Challenge☆43Updated last year
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆73Updated last week
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Updated last year
- ☆14Updated 3 months ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆30Updated last year
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆70Updated 7 months ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆48Updated last year
- Oncology Working Group Repository☆58Updated 3 months ago
- ETL Tool for converting datasets to OMOP CDM☆34Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 3 months ago
- ☆16Updated 6 months ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆34Updated last year
- ☆30Updated 7 years ago
- A Serverless Text Annotation Tool for Corpus Development☆57Updated 10 months ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆93Updated 2 years ago
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Updated last year
- Runtime repository for the SNOMED CT Entity Linking challenge on DrivenData☆14Updated last year
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work☆14Updated 4 years ago
- Code base, outputs, scoring guidelines and annotations for ChatGPT NCCN evaluation | Paper: https://jamanetwork.com/journals/jamaoncology…☆18Updated 2 years ago
- ☆66Updated 4 years ago
- ☆27Updated 6 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆68Updated 6 months ago
- ☆28Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆48Updated last year
- An ETL pipeline to transform your EMP data to OMOP.☆14Updated 2 months ago
- Training materials for Vocabulary & CDM Tutorial.☆22Updated 6 years ago