ETL Tool for converting datasets to OMOP CDM
☆37Nov 24, 2022Updated 3 years ago
Alternatives and similar repositories for omop-etl
Users that are interested in omop-etl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CDM Builder leveraging AWS Lambda☆21Updated this week
- ☆14Apr 14, 2026Updated 2 months ago
- An ETL pipeline to transform your EMP data to OMOP.☆18Oct 15, 2025Updated 8 months ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆43Nov 10, 2023Updated 2 years ago
- ☆13Nov 14, 2025Updated 7 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ETL code for converting Korean National Sample Cohort (NSC) derived from national insurance health service into OMOP-CDM v5 developed by …☆10Nov 20, 2019Updated 6 years ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆130Mar 23, 2026Updated 3 months ago
- Streamlined Data Mapping to OMOP☆24Apr 27, 2026Updated 2 months ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆92Jun 26, 2026Updated last week
- A collection of Helm charts☆10Updated this week
- Python package for machine learning for healthcare using a OMOP common data model☆111Jun 17, 2023Updated 3 years ago
- Jupyter Notebooks and other code for 4CE data visualizations.☆13Jan 25, 2023Updated 3 years ago
- Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.☆91May 6, 2026Updated 2 months ago
- A modern, lightweight medication sig parser.☆12Jan 21, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Medication Extraction and Reconciliation Knowledge Instrument☆13Jun 17, 2026Updated 3 weeks ago
- An R package for generating features (covariates) for a cohort using data in the Common Data Model.☆73Jun 28, 2026Updated last week
- Sample relational database load scripts and SQL queries for processing SNOMED CT-AU RF2 release files.☆18Jul 17, 2024Updated last year
- ☆33Jul 15, 2025Updated 11 months ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆64Jun 30, 2026Updated last week
- SQLAlchemy models for OHDSI OMOP Common Data Model☆13Updated this week
- Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.☆269Updated this week
- Natural Language to SQL Queries in the OMOP CDM Datasets☆11Jun 12, 2023Updated 3 years ago
- An R package that facilitates access to a variety of OMOP CDM sample data sets.☆49May 22, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion☆10Oct 20, 2020Updated 5 years ago
- Virtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.☆59Mar 7, 2021Updated 5 years ago
- Transform the OMOP model to graph model☆27Dec 13, 2024Updated last year
- Mapping the MIMIC-III database to the OMOP schema☆147Mar 17, 2024Updated 2 years ago
- ICD-10 nternational Statistical Classification of Diseases and Related Health Problems - Ground Truth and some Experimental R Code for N…☆14May 14, 2018Updated 8 years ago
- R interface to NLM RxNorm API to get drug names and class based on RxCUI☆30Mar 25, 2025Updated last year
- Definition and DDLs for the OMOP Common Data Model (CDM)☆1,061Nov 5, 2025Updated 8 months ago
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆31Aug 27, 2025Updated 10 months ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Jan 17, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A web-based version of the codebook, which generates a concise summary of every variable in a dataset.☆14Apr 9, 2022Updated 4 years ago
- Developer project for getting basic API integrations working in under 5 minutes☆11May 22, 2026Updated last month
- Runtime repository for the SNOMED CT Entity Linking challenge on DrivenData☆14Mar 5, 2024Updated 2 years ago
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Sep 18, 2025Updated 9 months ago
- Hebrew PHI identification and redaction toolkit☆21Mar 21, 2024Updated 2 years ago
- Medium Article☆11May 15, 2021Updated 5 years ago
- Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work☆14Jan 10, 2021Updated 5 years ago