The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream
☆66Jul 10, 2025Updated 11 months ago
Alternatives and similar repositories for Phenotype_Data_Acquisition
Users that are interested in Phenotype_Data_Acquisition are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data Ingestion and Harmonization☆46Mar 17, 2026Updated 3 months ago
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Dec 8, 2022Updated 3 years ago
- ☆25Feb 3, 2025Updated last year
- The PCORnet Common Data Model (CDM) Forum guidance repository contains materials intended to support implementation efforts by data partn…☆32Jun 1, 2020Updated 6 years ago
- A Shiny tool for performing manual review of electronic medical records☆25Sep 1, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆73Apr 10, 2026Updated 2 months ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆102Apr 24, 2024Updated 2 years ago
- Open source clinical text de-identification☆157Aug 20, 2024Updated last year
- ☆13Feb 5, 2026Updated 4 months ago
- Clinical Research Informatics☆13Aug 23, 2023Updated 2 years ago
- The OHDSI repository to provide comprehensive evidence for the covid-19☆13Jan 13, 2021Updated 5 years ago
- Repository for the GA4GH phenopacket schema☆98Updated this week
- Standalone shiny server container for viewing CellChat object☆14Feb 18, 2021Updated 5 years ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆16Sep 28, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications☆150Updated this week
- Builds a knowledge graph from the [COVID-19 Open Research Dataset (CORD-19)](https://pages.semanticscholar.org/coronavirus-research) data…☆16Mar 27, 2020Updated 6 years ago
- Pilot model and converter for integration of radiology data into OMOP-CDM☆23Nov 1, 2019Updated 6 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆36Jun 1, 2026Updated 2 weeks ago
- Back end for producing indicators and loading them into the COVIDcast API.☆12May 28, 2026Updated 3 weeks ago
- ☆12Nov 14, 2025Updated 7 months ago
- ☆14Feb 10, 2026Updated 4 months ago
- ETUDE (Evaluation Tool for Unstructured Data and Extractions) is a Python-based tool that provides consistent evaluation options across a…☆12Jul 22, 2022Updated 3 years ago
- This is an R package that implements a library of standard queries that run against the OMOP-CDM.☆18Jun 7, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Clinical Language Annotation Modeling and Processing toolkit☆17Oct 10, 2016Updated 9 years ago
- A Node.js framework for extracting mCODE FHIR resources☆23Dec 12, 2023Updated 2 years ago
- PMI DRC data repositories and APIs☆43Updated this week
- Source code for the i2b2 Web Client☆30May 1, 2023Updated 3 years ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆16Updated this week
- ☆19Apr 22, 2026Updated last month
- PCORnet Data Curation Query Package☆12Apr 3, 2026Updated 2 months ago
- ☆16Aug 28, 2020Updated 5 years ago
- Runs CQL phenotype definitions against an OMOP repository☆12Apr 14, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.☆87Mar 25, 2026Updated 2 months ago
- A Serverless Text Annotation Tool for Corpus Development☆60Feb 19, 2025Updated last year
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated 9 months ago
- Sketching out an RDF representation for FHIR☆47May 12, 2026Updated last month
- Hadoop integration code for working with with Apache cTAKES☆10Feb 11, 2014Updated 12 years ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆42Nov 10, 2023Updated 2 years ago
- SQLAlchemy models and DDL and ERD generation from chop-dbhi/data-models style JSON endpoints.☆11May 22, 2023Updated 3 years ago