National-Clinical-Cohort-Collaborative / Phenotype_Data_Acquisition
The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream
☆60Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for Phenotype_Data_Acquisition
- Oncology Working Group Repository☆56Updated 4 months ago
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Updated last year
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆41Updated last month
- ☆25Updated 7 months ago
- Data Ingestion and Harmonization☆42Updated last year
- This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.☆32Updated 3 years ago
- An R package for evaluating phenotype algorithms.☆17Updated last month
- An R package for generating features (covariates) for a cohort using data in the Common Data Model.☆60Updated 3 weeks ago
- Training materials for Vocabulary & CDM Tutorial.☆20Updated 5 years ago
- ☆24Updated 6 years ago
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated this week
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆84Updated last year
- ACT COVID Ontology☆15Updated 3 years ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆59Updated 3 weeks ago
- [in development]☆37Updated 3 years ago
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆11Updated 4 months ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆46Updated 4 months ago
- An R package for performing various cohort diagnostics.☆41Updated this week
- Repository of OHDSI Collaborative Research Protocols☆37Updated last year
- HDR UK National Phenotype Library☆20Updated last year
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆64Updated 3 months ago
- ETL-CDMBuilder is a repo containing a .NET Core application to perform ETL to OMOP CDM for multiple databases☆50Updated last year
- R package to easily interface with OMOP-formatted EHR data.☆35Updated 4 years ago
- Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.☆76Updated 6 months ago
- An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.☆82Updated 2 weeks ago
- Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.☆92Updated 5 months ago
- Course materials for OHDSI ETL tutorial☆45Updated 3 weeks ago
- The PCORnet Common Data Model (CDM) Forum guidance repository contains materials intended to support implementation efforts by data partn…☆30Updated 4 years ago
- Workproducts to ETL CMS datasets into OMOP Common Data Model☆98Updated 2 years ago
- An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.☆188Updated this week