OHDSI / OncologyWGLinks
Oncology Working Group Repository
☆57Updated this week
Alternatives and similar repositories for OncologyWG
Users that are interested in OncologyWG are comparing it to the libraries listed below
Sorting:
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 3 weeks ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆115Updated 7 months ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆69Updated 3 weeks ago
- Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.☆100Updated last year
- ☆29Updated 7 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆91Updated last year
- Leaf Clinical Data Explorer☆95Updated 5 months ago
- An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.☆206Updated this week
- ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data☆294Updated last month
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆64Updated 2 months ago
- Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a…☆140Updated this week
- ETL-CDMBuilder is a repo containing a .NET Core application to perform ETL to OMOP CDM for multiple databases☆53Updated 2 weeks ago
- Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.☆82Updated 5 months ago
- Mapping the MIMIC-III database to the OMOP schema☆141Updated last year
- Data Ingestion and Harmonization☆45Updated 2 weeks ago
- Course materials for OHDSI ETL tutorial☆52Updated 10 months ago
- OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications☆140Updated last week
- Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.☆248Updated this week
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆47Updated 5 months ago
- Training materials for Vocabulary & CDM Tutorial.☆21Updated 6 years ago
- An R package for performing various cohort diagnostics.☆47Updated 2 weeks ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆70Updated this week
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆84Updated this week
- ☆25Updated 7 months ago
- An R package for generating features (covariates) for a cohort using data in the Common Data Model.☆66Updated 2 weeks ago
- Workproducts to ETL CMS datasets into OMOP Common Data Model☆100Updated 3 years ago
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- Pilot model and converter for integration of radiology data into OMOP-CDM☆23Updated 5 years ago
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Updated last year
- This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.☆33Updated 3 months ago