OHDSI / OncologyWGLinks
Oncology Working Group Repository
☆57Updated 2 months ago
Alternatives and similar repositories for OncologyWG
Users that are interested in OncologyWG are comparing it to the libraries listed below
Sorting:
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 2 months ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆71Updated 2 months ago
- Leaf Clinical Data Explorer☆97Updated 2 weeks ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆118Updated 8 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆91Updated 2 years ago
- Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.☆84Updated 7 months ago
- ☆30Updated 7 years ago
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆64Updated 4 months ago
- Training materials for Vocabulary & CDM Tutorial.☆22Updated 6 years ago
- ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data☆298Updated last week
- Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a…☆143Updated 2 weeks ago
- OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications☆141Updated 2 weeks ago
- Course materials for OHDSI ETL tutorial☆52Updated last month
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆86Updated last week
- ETL-CDMBuilder is a repo containing a .NET Core application to perform ETL to OMOP CDM for multiple databases☆53Updated this week
- Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.☆103Updated last year
- An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.☆210Updated this week
- An R package for performing various cohort diagnostics.☆47Updated 2 months ago
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆49Updated last month
- Virtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.☆57Updated 4 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆71Updated 3 weeks ago
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.☆253Updated last week
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated 2 years ago
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- An R package for generating features (covariates) for a cohort using data in the Common Data Model.☆70Updated 3 weeks ago
- An R package that facilitates access to a variety of OMOP CDM sample data sets.☆46Updated 5 months ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Updated last year
- Pilot model and converter for integration of radiology data into OMOP-CDM☆23Updated 6 years ago