callahantiff / OMOP2OBOLinks
OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
☆88Updated last year
Alternatives and similar repositories for OMOP2OBO
Users that are interested in OMOP2OBO are comparing it to the libraries listed below
Sorting:
- Data Ingestion and Harmonization☆44Updated 2 months ago
- Medical action ontology☆58Updated 2 weeks ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆192Updated last year
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆31Updated last year
- loinc2hpo Annotation Data☆24Updated 2 years ago
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆63Updated 3 weeks ago
- A python library for calculating semantic similarity between patients in N3C☆13Updated 2 years ago
- Repository for the GA4GH phenopacket schema☆87Updated 9 months ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Updated 2 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆68Updated last week
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 7 months ago
- Transform the OMOP model to graph model☆22Updated 6 months ago
- ☆25Updated 4 months ago
- Github repo for the Experimental Factor Ontology (EFO)☆58Updated last week
- Oncology Working Group Repository☆56Updated this week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆79Updated 3 weeks ago
- ☆27Updated 6 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- PCORnet Ontology to OMOP - beta!☆11Updated last year
- Training materials for Vocabulary & CDM Tutorial.☆21Updated 5 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- Leaf Clinical Data Explorer☆91Updated 2 months ago
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Updated 3 months ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆41Updated last year
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆47Updated 2 months ago
- Computational LOINC in OWL.☆14Updated this week
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆16Updated last month
- Web app and CLI tools for working with biomedical terminologies. https://github.com/orgs/jhu-bids/projects/9/views/7☆12Updated this week
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆55Updated last week