callahantiff / OMOP2OBOLinks
OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
☆89Updated last year
Alternatives and similar repositories for OMOP2OBO
Users that are interested in OMOP2OBO are comparing it to the libraries listed below
Sorting:
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆194Updated last year
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆31Updated last year
- Mondo Disease Ontology☆262Updated this week
- Data Ingestion and Harmonization☆45Updated 3 months ago
- Medical action ontology☆60Updated 2 months ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- loinc2hpo Annotation Data☆24Updated 3 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- Repository for the GA4GH phenopacket schema☆88Updated 10 months ago
- Oncology Working Group Repository☆57Updated last week
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆64Updated last month
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆56Updated 2 weeks ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆79Updated last week
- Github repo for the Experimental Factor Ontology (EFO)☆58Updated this week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆38Updated this week
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆41Updated last year
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated last month
- PCORnet Ontology to OMOP - beta!☆11Updated last year
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆71Updated last week
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.☆24Updated last month
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Updated 4 months ago
- Map your disease and phenotype terms to the Open Targets platform ontology☆21Updated last month
- NCATS Biomedical Translator Reasoners Standard API☆37Updated 2 months ago
- OntoBrowser is a web-based application for managing ontologies☆42Updated 2 years ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆14Updated 4 years ago
- Schema and generated objects for biolink data model and upper ontology☆201Updated this week
- The Ontology for Biomedical Investigations☆85Updated this week
- Ontology for the description of human clinical features☆315Updated last week
- Ontology Lookup Service from SPOT at EBI☆97Updated 2 years ago
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.☆13Updated last week