Code for "Foundation Models Improve Perturbation Response Prediction"
☆29Apr 16, 2026Updated 5 months ago
Alternatives and similar repositories for foundation-models-perturbation
Users that are interested in foundation-models-perturbation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Aug 10, 2026Updated last month
- single-cell latent diffusion model☆63Updated this week
- ☆97Aug 10, 2026Updated last month
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆20Apr 16, 2026Updated 5 months ago
- Benchmark for agentic single cell data analysis☆36Jun 10, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Cellular Regulatory Network-Aware Transcriptomics Foundation Model☆38Dec 18, 2025Updated 9 months ago
- Fast semantic search for biorXiv manuscripts☆12Feb 16, 2025Updated last year
- ☆21Aug 17, 2026Updated last month
- Codebase for BioPathNet to predict links in biomedical knowledge graphs☆43Feb 19, 2026Updated 7 months ago
- Decoding Single-Cell Omics of Perturbation Responses Using DeSCOPE☆27Updated this week
- CompBioBench: A benchmark of 100 diverse, verifiable questions for agents for computational biology (scripts for running agents)☆52Apr 6, 2026Updated 5 months ago
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆120Mar 16, 2026Updated 6 months ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆40Mar 1, 2026Updated 6 months ago
- ☆47Apr 27, 2026Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A Predictive World Model of the Transcriptome☆35Oct 18, 2025Updated 11 months ago
- Fast string distance computation in Python☆16Dec 21, 2022Updated 3 years ago
- MaxToki: an autoregressive single-cell language model built on BioNeMo/NeMo/Megatron.☆28Jul 28, 2026Updated last month
- pytorch dataloaders for single-cell perturbation data☆54Jul 18, 2026Updated 2 months ago
- ☆20Jul 15, 2022Updated 4 years ago
- ☆10Apr 8, 2026Updated 5 months ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆16Nov 5, 2024Updated last year
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆38Sep 8, 2026Updated last week
- The code for gene set analysis by accessing domain databases☆120Dec 25, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A repository for reproducing experiments from the TxPert paper☆51Mar 25, 2026Updated 5 months ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆14Aug 8, 2024Updated 2 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆409Feb 1, 2025Updated last year
- ☆161Nov 6, 2025Updated 10 months ago
- Stochastic trace estimation using JAX☆22Aug 27, 2026Updated 3 weeks ago
- A model developed for the generation of scRNA-seq data☆96Jan 21, 2026Updated 7 months ago
- The complete FlowSOM package known from R, now available in Python!☆35Updated this week
- Comprehensive suite for evaluating perturbation prediction models☆160Jul 27, 2026Updated last month
- Official Python implementation of Delaunay Component Analysis algorithm☆12May 18, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆14Mar 1, 2012Updated 14 years ago
- Reproducibility repository for the Human Neural Organoid Atlas publication☆51Dec 16, 2024Updated last year
- Multimodal foundation model predicting transcriptome-wide virtual spatial transcriptomics from histology.☆54Sep 4, 2026Updated 2 weeks ago
- R package for transcriptomic biological age analysis☆26Updated this week
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆127Jul 6, 2025Updated last year
- ☆18Jul 29, 2026Updated last month
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15May 30, 2023Updated 3 years ago