NAL-i5K / genomics-workspace
Django website project for common sequence search tools.
☆17Updated 5 months ago
Alternatives and similar repositories for genomics-workspace:
Users that are interested in genomics-workspace are comparing it to the libraries listed below
- Generate unique KMERs for every contig in a FASTA file☆47Updated 2 years ago
- for visual evaluation of read support for structural variation☆52Updated 9 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 10 months ago
- Master of Pores 2☆23Updated 3 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- perSVade: personalized Structural Variation detection☆38Updated last month
- A reference viral database (RVDB)☆26Updated 6 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- Automatically design multiplex PCR primer pairs for diverse templates☆26Updated 10 months ago
- A collection of modules and sub-workflows for Nextflow☆26Updated last week
- A tutorial on structural variant calling for short read sequencing data☆31Updated 5 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆73Updated 10 months ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Error correction for Illumina RNA-seq reads☆65Updated last year
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- ☆47Updated 4 months ago
- Fully automated generation of UCSC assembly hubs☆34Updated 5 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 5 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated 11 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆35Updated 3 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago