Django website project for common sequence search tools.
☆17Feb 25, 2026Updated last week
Alternatives and similar repositories for genomics-workspace
Users that are interested in genomics-workspace are comparing it to the libraries listed below
Sorting:
- This repository is meant to serve as a record of my code for solving informatics problems. 📝☆11Feb 24, 2026Updated last week
- simple django app for blast search☆18Feb 3, 2026Updated last month
- An automated assembly pipeline for microbial genomes☆19Jan 15, 2026Updated last month
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Oct 29, 2019Updated 6 years ago
- PipeTaxon exposes the ncbi taxonomy database as a REST API.☆22Feb 15, 2023Updated 3 years ago
- A Better Sequencing Simulator for Metagenomics☆20May 8, 2020Updated 5 years ago
- ☆14Feb 18, 2026Updated 2 weeks ago
- This repository provides users with a framework to store, search and visualize biological data.☆27Jun 16, 2025Updated 8 months ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 9 months ago
- ☆10Dec 29, 2021Updated 4 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- ☆44Nov 20, 2021Updated 4 years ago
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic data☆10Nov 21, 2016Updated 9 years ago
- VETA - A simple tool do evaluate variant predictors☆11Jun 17, 2024Updated last year
- LongSom tool for long-reads☆11May 20, 2025Updated 9 months ago
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆10Nov 7, 2024Updated last year
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- Benchmark AFLOW Data Sets for Machine Learning doi.org/10.1007/s40192-020-00174-4☆11Aug 29, 2020Updated 5 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- ☆11Oct 11, 2024Updated last year
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 7 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 9 months ago
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- A visualization tool for Systems-Level Interactive Data Exploration☆12Jan 12, 2022Updated 4 years ago
- Python Programming for Biologists☆12Dec 3, 2025Updated 3 months ago
- Python library for talking to Apollo API☆10Jan 31, 2024Updated 2 years ago
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 10 years ago
- ☆10Jul 22, 2015Updated 10 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- ☆12Oct 31, 2020Updated 5 years ago
- This is the proof of concept, how a relatively unsophisticated statistical model trained on the large MPDS dataset predicts physical prop…☆11Oct 31, 2024Updated last year
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Nov 20, 2020Updated 5 years ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated 9 months ago
- Implementation (in progress) of Dieng et al.'s TopicRNN intended to be used as a baseline and starting point.☆10Jun 26, 2018Updated 7 years ago
- Numerical Run Length Encoding and Arithmetic in Cython☆19Jan 28, 2026Updated last month
- ☆10Aug 13, 2025Updated 6 months ago