NAL-i5K / genomics-workspaceView external linksLinks
Django website project for common sequence search tools.
β17Oct 1, 2024Updated last year
Alternatives and similar repositories for genomics-workspace
Users that are interested in genomics-workspace are comparing it to the libraries listed below
Sorting:
- This repository is meant to serve as a record of my code for solving informatics problems. πβ11Updated this week
- An automated assembly pipeline for microbial genomesβ19Jan 15, 2026Updated last month
- PipeTaxon exposes the ncbi taxonomy database as a REST API.β22Feb 15, 2023Updated 2 years ago
- A Better Sequencing Simulator for Metagenomicsβ20May 8, 2020Updated 5 years ago
- MCMCtree tutorialsβ28May 27, 2024Updated last year
- β14Jan 25, 2024Updated 2 years ago
- Assembling the cause of phenotypes and genotypes from NGS dataβ29Jun 11, 2020Updated 5 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.β¦β12May 8, 2025Updated 9 months ago
- β10Dec 29, 2021Updated 4 years ago
- rnalib: a python-based transcriptomics libraryβ11Jan 23, 2026Updated 3 weeks ago
- β44Nov 20, 2021Updated 4 years ago
- Benchmark AFLOW Data Sets for Machine Learning doi.org/10.1007/s40192-020-00174-4β11Aug 29, 2020Updated 5 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.β11Jan 15, 2021Updated 5 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as Cβ¦β11May 28, 2021Updated 4 years ago
- Gene expression viewer templateβ11Aug 30, 2017Updated 8 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantificationβ10May 12, 2025Updated 9 months ago
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic dataβ10Nov 21, 2016Updated 9 years ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and Hβ¦β10May 3, 2018Updated 7 years ago
- β11Oct 11, 2024Updated last year
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic dataβ10Nov 7, 2024Updated last year
- Scripts in R for Landscape Genomics Analyses v.2β10Feb 17, 2023Updated 2 years ago
- VETA - A simple tool do evaluate variant predictorsβ11Jun 17, 2024Updated last year
- LongSom tool for long-readsβ11May 20, 2025Updated 8 months ago
- β10Jul 22, 2015Updated 10 years ago
- i2dash: interactive and iterative dashboards.β10Sep 5, 2023Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomesβ13Jun 10, 2021Updated 4 years ago
- Demographic analysis of Brassica oleraceaβ10Jan 30, 2026Updated 2 weeks ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensembβ¦β10May 7, 2017Updated 8 years ago
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.β12Jun 13, 2017Updated 8 years ago
- β12Oct 31, 2020Updated 5 years ago
- RDKit integration to SQLAlchemyβ10Oct 6, 2020Updated 5 years ago
- Implementation (in progress) of Dieng et al.'s TopicRNN intended to be used as a baseline and starting point.β10Jun 26, 2018Updated 7 years ago
- A tool for the perception of chemical bonds via machine learningβ10Nov 15, 2025Updated 2 months ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.β11Apr 13, 2024Updated last year
- Repository of GESIS Shiny Workshop.β11Jun 6, 2025Updated 8 months ago
- Utility functions to extend and optimize GenomicRanges functionality.β10Mar 6, 2025Updated 11 months ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing lossβ11May 14, 2025Updated 9 months ago
- Python Programming for Biologistsβ12Dec 3, 2025Updated 2 months ago
- Cool Bioinformatics Scriptsβ12May 21, 2024Updated last year