Center-for-Health-Data-Science / PythonTsunamiLinks
An introductory course to Python by the Center of Health Data Science (University of Copenhagen)
☆18Updated 3 months ago
Alternatives and similar repositories for PythonTsunami
Users that are interested in PythonTsunami are comparing it to the libraries listed below
Sorting:
- ☆10Updated last year
- A collection of available Python tools for Proteomics analysis☆56Updated 6 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆79Updated 3 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆69Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆119Updated last month
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆88Updated 2 months ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆39Updated 4 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 3 months ago
- Compgen Course 2025, Module 3 Course Material, Multi-omics integration using deep learning☆58Updated 3 months ago
- A cross-platform proteomics data analysis suite☆237Updated this week
- Report processing and protein quantification for MS-based proteomics☆46Updated last year
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆58Updated 2 months ago
- ☆26Updated 4 years ago
- ☆50Updated 2 weeks ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆117Updated last week
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- Python packaging for CPTAC data☆95Updated last year
- A list of tools on proteomics using deep learning☆97Updated last year
- GSE analysis for microarray data, for the tutorial as shown in https://www.youtube.com/watch?v=JQ24T9fpXvg&t=947s☆19Updated 4 years ago
- This repository is used for the HeaDS git and GitHub workshop 2023☆16Updated 8 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆288Updated last week
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆283Updated last week
- Infrastructure of AlphaX ecosystem☆38Updated 3 weeks ago
- Step-by-step analysis pipeline for RNA-seq data☆127Updated last year
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆89Updated 4 years ago
- Mass spectrometry imaging toolbox☆58Updated 6 months ago
- ☆23Updated 8 years ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 7 months ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆170Updated 4 years ago