Alternatives and similar repositories for PythonTsunami

Users that are interested in PythonTsunami are comparing it to the libraries listed below

• Center-for-Health-Data-Science / IntroToML
  ☆10Updated last year
• Nesvilab / FragPipe
  A cross-platform proteomics data analysis suite
  ☆240Updated this week
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆58Updated 6 years ago
• vdemichev / DiaNN
  DIA-NN - a universal automated software suite for DIA proteomics data analysis.
  ☆356Updated last month
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆284Updated last month
• sib-swiss / intro-machine-learning-training
  ☆50Updated 2 weeks ago
• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆79Updated 3 years ago
• ZenBrayn / asms_2020_fall_workshop
  ☆26Updated 4 years ago
• Center-for-Health-Data-Science / git-GitHub-workshop
  This repository is used for the HeaDS git and GitHub workshop 2023
  ☆16Updated 9 months ago
• MannLabs / alphabase
  Infrastructure of AlphaX ecosystem
  ☆40Updated 2 weeks ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆70Updated 3 weeks ago
• BIMSBbioinfo / compgen_course_2025_module3
  Compgen Course 2025, Module 3 Course Material, Multi-omics integration using deep learning
  ☆60Updated 4 months ago
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆119Updated 2 weeks ago
• gladstone-institutes / Bioinformatics-Workshops
  Workshops presented by the Gladstone Bioinformatics Core
  ☆232Updated 2 months ago
• sib-swiss / intermediate-python-training
  ☆66Updated 3 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆82Updated 4 months ago
• Nesvilab / philosopher
  PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
  ☆117Updated 2 weeks ago
• evanpeikon / Bioinformatics_Toolkit
  A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessib…
  ☆281Updated last week
• mortazavilab / PyWGCNA
  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
  ☆254Updated 5 months ago
• mgleeming / synthedia
  Create synthetic DIA LC-MS/MS for proteomics experiments
  ☆15Updated 2 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆145Updated this week
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆91Updated 3 months ago
• deanslee / FigureOneLab
  Hone computational biology skills by re-enacting Figure 1 of modern biology papers
  ☆245Updated 11 months ago
• GuyTeichman / RNAlysis
  Analyze your RNA sequencing data without writing a single line of code
  ☆135Updated last month
• pwilmart / TMT_analysis_examples
  Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
  ☆22Updated 3 years ago
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆97Updated last year
• reneshbedre / bioinfokit
  Bioinformatics data analysis and visualization toolkit
  ☆352Updated last year
• Genentech / BRAID
  BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.
  ☆202Updated 3 weeks ago
• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆643Updated last month
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆130Updated last year