Center-for-Health-Data-Science / PythonTsunami

Related projects ⓘ

Alternatives and complementary repositories for PythonTsunami

• Center-for-Health-Data-Science / IntroToML
  ☆10Updated 6 months ago
• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆68Updated 2 years ago
• ZenBrayn / asms_2020_fall_workshop
  ☆26Updated 4 years ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆60Updated this week
• Nesvilab / FragPipe
  A cross-platform proteomics data analysis suite
  ☆206Updated last week
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆107Updated 5 months ago
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆48Updated 5 years ago
• Center-for-Health-Data-Science / git-GitHub-workshop
  This repository is used for the HeaDS git and GitHub workshop 2023
  ☆16Updated last month
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆76Updated 2 weeks ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆36Updated last year
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆110Updated this week
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆78Updated last month
• pwilmart / TMT_analysis_examples
  Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
  ☆21Updated 2 years ago
• hbc / NGS_Data_Analysis_Course
  ☆22Updated 8 years ago
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆77Updated 7 months ago
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆88Updated 6 months ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆89Updated 4 months ago
• CIMCB / MetabWorkflowTutorial
  https://cimcb.github.io/MetabWorkflowTutorial/
  ☆27Updated 2 years ago
• Nesvilab / philosopher
  PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
  ☆111Updated last week
• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆90Updated 3 years ago
• Lindseynicer / How-to-analyze-GEO-microarray-data
  GSE analysis for microarray data, for the tutorial as shown in https://www.youtube.com/watch?v=JQ24T9fpXvg&t=947s
  ☆16Updated 3 years ago
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆53Updated 5 months ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆77Updated last year
• GuyTeichman / RNAlysis
  Analyze your RNA sequencing data without writing a single line of code
  ☆129Updated last month
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆66Updated 4 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆134Updated this week
• sib-swiss / intermediate-python-training
  ☆63Updated last week
• MannLabs / alphabase
  Infrastructure of AlphaX ecosystem
  ☆31Updated this week
• vdemichev / DiaNN
  DIA-NN - a universal automated software suite for DIA proteomics data analysis.
  ☆281Updated last week
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆42Updated 2 weeks ago