Step-by-step guide to install and configure AlphaFold 3 using a Conda Python 3.11 environment. No system-wide installations required. β
Miniconda setup & dependencies β
Repository cloning & model setup β
Database configuration & execution script πΉ Requirements: Linux, NVIDIA GPU (Ampere+), CUDA, ~700GB disk space.
β51Aug 5, 2026Updated 3 weeks ago
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