BioDynaMo / biodynamoLinks
BioDynaMo is a high-performance and modular, agent-based simulation platform.
☆122Updated this week
Alternatives and similar repositories for biodynamo
Users that are interested in biodynamo are comparing it to the libraries listed below
Sorting:
- Rule-based modeling framework☆65Updated 6 months ago
- libRoadRunner: A high-performance SBML simulator☆55Updated last week
- The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from vis…☆66Updated last year
- Modeling toolkit for biochemical simulation☆81Updated 10 months ago
- PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…☆187Updated 10 months ago
- Simulation platform of animal embryogenesis☆20Updated 3 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆117Updated last week
- CompuCell3D public source code repository☆77Updated last week
- Virtual Cell Framework☆102Updated this week
- ☆33Updated 5 months ago
- Code repository for the massively-parallel framework for maximum-likelihood fits, implemented in CUDA/OpenMP☆142Updated this week
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆51Updated last year
- Chaste - Cancer Heart And Soft Tissue Environment - main public repository.☆142Updated last week
- A library for exploring persistent homology☆104Updated 4 months ago
- This is a library plus a test harness for collecting algorithms that use the GraphBLAS. For test coverage reports, see https://graphblas…☆260Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆28Updated last week
- GPU-accelerated multicellular modelling framework☆67Updated 7 months ago
- Scalable High-performance Algorithms and Data-structures☆134Updated last week
- Machine Learning for HPC Workflows☆144Updated last week
- ☆19Updated 3 weeks ago
- Public release repository for STochastic Engine for Pathway Simulation (STEPS)☆43Updated 6 months ago
- Geometric algebra in JAX and numpy☆85Updated last week
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆11Updated last year
- GraphBLAS Template Library (GBTL): C++ graph algorithms and primitives using semiring algebra as defined at graphblas.org☆137Updated 2 years ago
- FLAME GPU 2 is a GPU accelerated agent based modelling framework for CUDA C++ and Python☆133Updated 2 weeks ago
- Practical volume computation and sampling in high dimensions☆177Updated last month
- Python Environment for Modeling and Simulating Biological Systems☆128Updated last week
- Dynamic matrix type and algorithms for sparse matrices☆23Updated 10 months ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Python framework for Systems Biology modeling☆190Updated 4 months ago