weria-pezeshkian / FreeDTSLinks
a package to simulate fluid surfaces and biomembranes
☆32Updated 2 weeks ago
Alternatives and similar repositories for FreeDTS
Users that are interested in FreeDTS are comparing it to the libraries listed below
Sorting:
- ☆56Updated 2 years ago
- ☆69Updated last month
- INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems☆65Updated last year
- TS2CG version 2☆17Updated this week
- ☆68Updated last year
- A simple implementation of replica exchange MD simulations for OpenMM.☆24Updated 4 years ago
- Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics☆88Updated 6 months ago
- Force Fields☆64Updated 6 months ago
- Enhanced sampling methods for molecular dynamics simulations☆37Updated 2 years ago
- PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.☆141Updated 6 months ago
- Random Acceleration Molecular Dynamics in GROMACS☆38Updated last year
- ☆33Updated 9 months ago
- Collection of interaction and molecule parameters for the Martini3 force-field☆17Updated 2 years ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆83Updated 3 weeks ago
- Workshop teaching QMMM using Amber☆65Updated this week
- MDANCE is a flexible n-ary clustering package for all applications.☆69Updated last month
- OpenMM plugin to interface with PLUMED☆68Updated 5 months ago
- Input files for GROMACS tutorials written for the Journal of Physical Chemistry B☆20Updated last year
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆71Updated 6 months ago
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆43Updated 5 years ago
- Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)☆32Updated last year
- ☆125Updated last year
- STORMM: Structure and TOpology Replica Molecular Mechanics☆78Updated 2 months ago
- ☆45Updated 3 months ago
- Describe and apply transformation on molecular structures and topologies☆118Updated this week
- ☆15Updated 3 years ago
- Create coarse grain Martini input files for Gromacs from (atomistic) pdb files.☆37Updated 2 years ago
- An interoperable Python framework for biomolecular simulation.☆119Updated this week
- Best practice document for alchemical free energy calculations going to livecoms journal☆75Updated this week
- An application for configuring and running simulations with OpenMM☆71Updated 3 weeks ago