Martini Workshop: Simulating a Minimal Bacterial Cell
☆15May 13, 2024Updated last year
Alternatives and similar repositories for martini-workshop
Users that are interested in martini-workshop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TS2CG version 2☆26Feb 28, 2026Updated 3 weeks ago
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆41Jan 30, 2024Updated 2 years ago
- uv on one url, bare bones for testing☆11Nov 16, 2025Updated 4 months ago
- A tool for visualizing Martini force field simulations in VMD☆22Aug 22, 2025Updated 7 months ago
- a package to simulate fluid surfaces and biomembranes☆36Dec 22, 2025Updated 3 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Analysis workflow for investigating the structural context of PTMs☆11Jan 8, 2024Updated 2 years ago
- A stunning web proxy with support for many popular sites.☆14Dec 26, 2024Updated last year
- ☆36Jul 8, 2025Updated 8 months ago
- ☆15Sep 24, 2024Updated last year
- CGView.js creates interactive circular and linear genome maps.☆45Mar 18, 2026Updated last week
- Whole Cell Model of E. coli☆39Updated this week
- ☆19Jan 23, 2026Updated 2 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Release of the whole cell E. coli model.☆76Dec 10, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies☆18Feb 13, 2026Updated last month
- Random Circuit Perturbation Method☆16Jun 29, 2020Updated 5 years ago
- Render a black hole.☆12Jan 20, 2022Updated 4 years ago
- CeSpGRN: Inferring cell specific GRN using single-cell gene expression data☆21Updated this week
- ☆17Feb 5, 2026Updated last month
- To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.☆27Apr 15, 2025Updated 11 months ago
- Code for paper "ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning"☆13Jan 24, 2022Updated 4 years ago
- From cryo-EM density map to atomic structure☆30Aug 17, 2025Updated 7 months ago
- R package for functionally scoring phosphorylation sites☆23Nov 3, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- An implemention of parallel marching cubes algorithm by CUDA☆10Sep 23, 2021Updated 4 years ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆60Oct 27, 2015Updated 10 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆19May 24, 2024Updated last year
- INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems☆82Mar 16, 2026Updated last week
- GitHub Repository for "Sigma Profiles in Deep Learning: Towards a Universal Molecular Descriptor"☆12Jul 25, 2024Updated last year
- Pipeline for protein-protein interaction prediction☆27Feb 22, 2022Updated 4 years ago
- ☆64Dec 10, 2025Updated 3 months ago
- ☆104Oct 6, 2022Updated 3 years ago
- Biological Pathway Visualization☆11Apr 8, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- LigParGen python package version 2.3 (beta)☆13Apr 19, 2025Updated 11 months ago
- ☆10Jan 19, 2019Updated 7 years ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆27Nov 7, 2024Updated last year
- This is a repository for paper "Towards Data-driven Design of Asymmetric Hydrogenation of Olefins: Database and Hierarchical Learning".☆11Sep 10, 2025Updated 6 months ago
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆19Oct 31, 2025Updated 4 months ago
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago