Martini Workshop: Simulating a Minimal Bacterial Cell
☆15May 13, 2024Updated last year
Alternatives and similar repositories for martini-workshop
Users that are interested in martini-workshop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TS2CG version 2☆27Apr 7, 2026Updated 2 weeks ago
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆41Jan 30, 2024Updated 2 years ago
- A particle simulation running in parallel on the GPU using compute shaders. The particle simulation looks astounding and very life-like a…☆14Jul 11, 2020Updated 5 years ago
- uv on one url, bare bones for testing☆11Nov 16, 2025Updated 5 months ago
- A tool for visualizing Martini force field simulations in VMD☆23Aug 22, 2025Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- a package to simulate fluid surfaces and biomembranes☆36Dec 22, 2025Updated 3 months ago
- Analysis workflow for investigating the structural context of PTMs☆11Jan 8, 2024Updated 2 years ago
- A stunning web proxy with support for many popular sites.☆14Dec 26, 2024Updated last year
- ☆39Jul 8, 2025Updated 9 months ago
- ☆16Sep 24, 2024Updated last year
- CGView.js creates interactive circular and linear genome maps.☆46Apr 10, 2026Updated last week
- Whole Cell Model of E. coli☆40Apr 13, 2026Updated last week
- ☆19Jan 23, 2026Updated 2 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Release of the whole cell E. coli model.☆77Dec 10, 2024Updated last year
- Random Circuit Perturbation Method☆16Jun 29, 2020Updated 5 years ago
- REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies☆18Feb 13, 2026Updated 2 months ago
- Render a black hole.☆12Jan 20, 2022Updated 4 years ago
- CeSpGRN: Inferring cell specific GRN using single-cell gene expression data☆21Mar 23, 2026Updated 3 weeks ago
- ☆17Feb 5, 2026Updated 2 months ago
- Code for paper "ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning"☆13Jan 24, 2022Updated 4 years ago
- From cryo-EM density map to atomic structure☆30Aug 17, 2025Updated 8 months ago
- To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.☆29Apr 15, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for functionally scoring phosphorylation sites☆23Nov 3, 2019Updated 6 years ago
- An implemention of parallel marching cubes algorithm by CUDA☆10Sep 23, 2021Updated 4 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆19May 24, 2024Updated last year
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆60Oct 27, 2015Updated 10 years ago
- GitHub Repository for "Sigma Profiles in Deep Learning: Towards a Universal Molecular Descriptor"☆12Jul 25, 2024Updated last year
- Pipeline for protein-protein interaction prediction☆27Feb 22, 2022Updated 4 years ago
- ☆64Dec 10, 2025Updated 4 months ago
- INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems☆83Updated this week
- Biological Pathway Visualization☆11Apr 8, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆106Oct 6, 2022Updated 3 years ago
- LigParGen python package version 2.3 (beta)☆14Apr 19, 2025Updated last year
- ☆10Jan 19, 2019Updated 7 years ago
- This is a repository for paper "Towards Data-driven Design of Asymmetric Hydrogenation of Olefins: Database and Hierarchical Learning".☆12Sep 10, 2025Updated 7 months ago
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 9 years ago
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆20Oct 31, 2025Updated 5 months ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago