physicell-training / ws2022

Related projects ⓘ

Alternatives and complementary repositories for ws2022

• MathCancer / PhysiCell
  PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…
  ☆144Updated this week
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆54Updated last year
• tissue-forge / tissue-forge
  Interactive, particle-based physics, chemistry and biology modeling and simulation environment
  ☆18Updated 2 weeks ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆23Updated this week
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆61Updated last year
• SBRG / MASSpy
  ☆22Updated last year
• EPFL-LCSB / skimpy
  Symbolic Kinetic Models with Python
  ☆30Updated 2 months ago
• quantixed / manuscript-templates
  LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.
  ☆69Updated 5 months ago
• zj-zhang / AMBER
  Automated Modelling for Biological Evidence-based Research
  ☆44Updated last year
• msneddon / nfsim
  A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
  ☆17Updated 6 months ago
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆26Updated 2 years ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆19Updated 2 months ago
• davidlevybooth / MBINF-Introduction-to-Python
  MBINF Introduction to Python Workshop 2024
  ☆24Updated 2 months ago
• PhysiCell-Tools / PhysiCell-Studio
  PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and vis…
  ☆22Updated this week
• phievo / phievo
  Software for in silico evolution - Paul François' group McGill University
  ☆10Updated 2 years ago
• msmdev / pyGPCCA
  pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…
  ☆21Updated this week
• biocircuits / bioscrape
  BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
  ☆20Updated 4 months ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆242Updated this week
• fayjustin / computational_biology
  course material
  ☆122Updated last year
• CompuCell3D / CompuCell3D
  CompuCell3D public source code repository
  ☆63Updated 3 weeks ago
• jertubiana / PGM
  Probabilistic Graphical Models in Python3.
  ☆24Updated last year
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆32Updated 3 years ago
• sysbio-curie / Neko
  ☆11Updated 3 weeks ago
• CollepardoLab / CollepardoLab_Chromatin_Model
  Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome inter…
  ☆12Updated 2 years ago
• tlubitz / parameter_balancing
  Software tool for metabolic modelling in Systems Biology
  ☆10Updated 3 years ago
• BuildACell / bioCRNpyler
  A modular compiler for biological chemical reaction networks
  ☆40Updated 2 months ago
• BIMSBbioinfo / compgen2021
  ☆73Updated 3 years ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆25Updated 2 weeks ago
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆73Updated 2 months ago
• AndrewGYork / gfp_magnetofluorescence
  A scientific publication that describes a simple, nontoxic, biocompatible way to control the brightness of fluorescent proteins via modes…
  ☆15Updated 5 months ago