physicell-training / ws2022
2022 PhysiCell Hackathon and Workshop
☆12Updated 2 years ago
Alternatives and similar repositories for ws2022:
Users that are interested in ws2022 are comparing it to the libraries listed below
- CellBox: Interpretable Machine Learning for Perturbation Biology☆53Updated last year
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆23Updated this week
- PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…☆150Updated 2 weeks ago
- Interactive, particle-based physics, chemistry and biology modeling and simulation environment☆21Updated 3 weeks ago
- PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and vis…☆21Updated 2 weeks ago
- Release of the whole cell E. coli model.☆63Updated 2 months ago
- A high-fidelity E. coli RNA-seq compendium☆33Updated 3 years ago
- Software tool for metabolic modelling in Systems Biology☆10Updated 4 years ago
- Symbolic Kinetic Models with Python☆30Updated this week
- A python toolbox for 13C metabolic flux analysis☆19Updated 5 months ago
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆72Updated 8 months ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆20Updated this week
- course material☆124Updated 2 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆104Updated this week
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆28Updated 2 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 5 months ago
- ☆12Updated last week
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆21Updated 2 months ago
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biology☆56Updated this week
- 3rd Annual Undergraduate Quantitative Biology (UQ-bio) Summer School☆13Updated last year
- Chromosome polymer simulations and in silico capture experiments☆47Updated last year
- Computational Biology- Spring 2021☆46Updated 3 years ago
- MBINF Introduction to Python Workshop 2024☆24Updated 5 months ago
- Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I☆99Updated 2 years ago
- Software for in silico evolution - Paul François' group McGill University☆10Updated 2 years ago
- Reconstruction algorithms for Python☆23Updated 3 months ago
- ☆22Updated 2 years ago
- Python framework for Systems Biology modeling☆174Updated 4 months ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆37Updated 3 weeks ago
- Whole-cell modeling tutorials☆16Updated 4 years ago