An open-source Python package for accurate and sensitive peptide and protein quantification.
☆21Aug 1, 2026Updated last week
Alternatives and similar repositories for alphaquant
Users that are interested in alphaquant are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- modular & open DIA search☆111Jul 30, 2026Updated last week
- Read/write functions to and from spatialdata for Deep Visual Proteomics☆20Jul 29, 2026Updated last week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆39Jun 3, 2026Updated 2 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆86Jan 6, 2022Updated 4 years ago
- Python package for investigating the structural context of PTMs☆29Jan 9, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆88Nov 21, 2025Updated 8 months ago
- Infrastructure of AlphaX ecosystem☆56Updated this week
- ☆10Mar 2, 2021Updated 5 years ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆38Jun 10, 2024Updated 2 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆94Nov 17, 2025Updated 8 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆98Jun 3, 2026Updated 2 months ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆191Apr 19, 2024Updated 2 years ago
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆25Updated this week
- Python library for analyzing mass spectrometry proteomics data.☆15Mar 20, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆13Feb 8, 2021Updated 5 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated 3 weeks ago
- Imputing proteomics data using deep learning models☆35Jul 8, 2026Updated last month
- An open-source Python package to unify raw MS data accession and storage.☆33Updated this week
- Analysis workflow for investigating the structural context of PTMs☆11Jan 8, 2024Updated 2 years ago
- [Nature Machine Intelligence], the first open de novo sequencing and open database search rescoring deep learning model.☆44May 30, 2026Updated 2 months ago
- ☆10Aug 7, 2020Updated 6 years ago
- Deep learning framework for proteomics☆156Jul 30, 2026Updated last week
- Community-curated tutorials and datasets for ML in proteomics☆61Oct 31, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆110Aug 3, 2026Updated last week
- ☆35Jul 16, 2026Updated 3 weeks ago
- ☆14Feb 11, 2020Updated 6 years ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- Facilitating the use of Deep Visual Proteomics☆17Jan 16, 2026Updated 6 months ago
- Flexible HDF5 saving/loading library forked from deepdish (University of Chicago) and maintained by the Portugues lab☆16Dec 6, 2024Updated last year
- Analysis of co-fractionation MS datasets☆13Dec 7, 2021Updated 4 years ago
- Generate multifunctional and macro recordable GUIs from Python classes☆46Updated this week
- ☆23Aug 1, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ALD study data analysis☆13Feb 16, 2023Updated 3 years ago
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Apr 5, 2023Updated 3 years ago
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- R syndRomics package☆19May 20, 2025Updated last year
- ☆13Aug 20, 2020Updated 5 years ago
- An LC-MS/MS glycan and glycopeptide search engine☆14Sep 15, 2025Updated 10 months ago
- A collection of available Python tools for Proteomics analysis☆68Jan 31, 2026Updated 6 months ago