VIB-PSB / MINI-EXView external linksLinks
Motif-Informed Network Inference of cell type-specific gene regulatory networks in plants
☆23Jan 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for MINI-EX
Users that are interested in MINI-EX are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆19Sep 29, 2025Updated 4 months ago
- ☆13Sep 11, 2024Updated last year
- Github repository for nanoSPLITS manuscript data and R scripts☆10Oct 11, 2024Updated last year
- CLI tool to manage your ARCs☆12Nov 28, 2025Updated 2 months ago
- A Course on designing high-throughput experiments☆12Sep 25, 2024Updated last year
- de Bruijn Workflow using Integral information of Short pair End reads☆13Aug 21, 2024Updated last year
- 📖 A review of KGEM packages and frameworks at https://pykeen.github.io/kgem-software-review.☆12Jun 24, 2024Updated last year
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆14May 25, 2022Updated 3 years ago
- ☆15Mar 6, 2025Updated 11 months ago
- ☆13Nov 27, 2025Updated 2 months ago
- Code that illustrates some of owlready2 functionality to parse an owl file☆11Feb 7, 2023Updated 3 years ago
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 7 years ago
- ☆20Jan 19, 2026Updated 3 weeks ago
- Parameter estimation for PDEs☆10Sep 12, 2019Updated 6 years ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated last month
- MuDCoD: Multi-subject Dynamic Community Detection☆12Mar 18, 2025Updated 10 months ago
- Website to generate printable layout of standard french keyboard AZERTY NF Z71-300☆13Aug 29, 2024Updated last year
- ☆11Sep 17, 2020Updated 5 years ago
- ☆11Aug 8, 2025Updated 6 months ago
- Feature-aware Directed OrtholoG search☆14Dec 17, 2025Updated last month
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Updated this week
- Parse PubMed XML into a data frame in R☆16May 2, 2021Updated 4 years ago
- Evaluation framework for computationally inferred gene networks from single-cell data.☆18Oct 23, 2025Updated 3 months ago
- ☆11Apr 20, 2020Updated 5 years ago
- Phase 2 repo for the Inserm Workshop on Machine Learning in Biology☆18Dec 17, 2025Updated last month
- Querying cellular states and programs by learning representations of gene sets☆15Nov 2, 2025Updated 3 months ago
- Auto-annotations from Mouse brain development☆13Jul 11, 2020Updated 5 years ago
- CNN BiGRU ensembled-method☆12Jul 30, 2018Updated 7 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆18Jun 9, 2025Updated 8 months ago
- Use this repository as a template for your research projects. Click on the link below for a detailed description of how to use this templ…☆16Aug 12, 2025Updated 6 months ago
- This is a django app which you can modify and improve your autogenerated swagger documentation from your drf API.☆16Dec 26, 2022Updated 3 years ago
- This reposotory is used to document the work of the NFDI Section (Meta)Data Working Group on Ontology Harmonization and Mapping.☆17Feb 6, 2026Updated last week
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Dec 15, 2021Updated 4 years ago
- CRAN Task View: Reproducible Research☆19Oct 8, 2025Updated 4 months ago
- Course materials for An Introduction to Machine Learning 2019☆16Oct 1, 2019Updated 6 years ago
- Get bibtex from saved Google Scholar articles☆17Feb 2, 2019Updated 7 years ago
- ☆14Feb 24, 2020Updated 5 years ago