Alternatives and similar repositories for Machine-learning

Users that are interested in Machine-learning are comparing it to the libraries listed below

• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆53Updated 9 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago
• zpliulab / GENELink
  ☆30Updated 2 years ago
• melobio / Concerto-reproducibility
  ☆38Updated 2 years ago
• SmritiChawla / Precily
  ☆30Updated 2 years ago
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆103Updated last year
• TencentAILabHealthcare / scPROTEIN
  ☆50Updated 5 months ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆61Updated 2 years ago
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆123Updated 2 years ago
• bm2-lab / scLearn
  scLearn：Learning for single cell assignment
  ☆35Updated 5 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆80Updated 2 years ago
• QuKunLab / MultiomeBenchmarking
  ☆44Updated 2 months ago
• zhanglab-wbgcas / STGRNS
  ☆29Updated 2 years ago
• brianpenghe / Bio-Jobs
  A list of positions (mostly biology-related) open to apply
  ☆35Updated 3 weeks ago
• sunyolo / DeepTFni
  A VGAE-based model to infer transcription factor regulatory network
  ☆26Updated 2 years ago
• gao-lab / Cell_BLAST
  A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
  ☆91Updated 9 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆141Updated last year
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆77Updated last week
• jsxlei / SCALE
  Single-cell ATAC-seq analysis via Latent feature Extraction
  ☆102Updated last year
• theislab / scgen-reproducibility
  ☆26Updated 4 years ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆72Updated 2 months ago
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆77Updated 4 years ago
• TencentAILabHealthcare / scTranslator
  ☆36Updated 9 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆63Updated 2 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆41Updated last year
• Lifoof / MoGCN
  Multi-omics integration method using AE and GCN
  ☆34Updated last year
• ttgump / spaVAE
  Dependency-aware deep generative models for multitasking analysis of spatial genomics data
  ☆35Updated 10 months ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆34Updated 5 years ago
• yhchen1123 / CoGO
  CoGO: a contrastive learning framework to predict disease similarity based on gene network and ontology structure
  ☆16Updated 7 months ago
• smaslova / AI-TAC
  ☆27Updated last year