Alternatives and similar repositories for Machine-learning

Users that are interested in Machine-learning are comparing it to the libraries listed below

• XinmingTu / Awesome-Bio-ML-PKU
  This is a repo that includes some resources about machine learning and the application in biology. We are students/alumni of Peking Unive…
  ☆15Updated 5 years ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆54Updated 10 months ago
• deepomicslab / GCNFrame
  This is a python package for genomics study with a GCN framework.
  ☆41Updated 5 months ago
• sunyolo / DeepTFni
  A VGAE-based model to infer transcription factor regulatory network
  ☆27Updated 2 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago
• jsxlei / SCALE
  Single-cell ATAC-seq analysis via Latent feature Extraction
  ☆102Updated last year
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆80Updated 2 years ago
• TencentAILabHealthcare / scPROTEIN
  ☆50Updated 6 months ago
• brianpenghe / Bio-Jobs
  A list of positions (mostly biology-related) open to apply
  ☆35Updated last month
• Lifoof / MoGCN
  Multi-omics integration method using AE and GCN
  ☆34Updated 2 years ago
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆103Updated last year
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆77Updated last week
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆77Updated 4 years ago
• SmritiChawla / Precily
  ☆30Updated 2 years ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆75Updated 11 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆142Updated last year
• biocore / tcga
  Microbial analysis in TCGA data
  ☆91Updated last year
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆123Updated 2 years ago
• bm2-lab / scLearn
  scLearn：Learning for single cell assignment
  ☆35Updated 5 months ago
• gao-lab / Cell_BLAST
  A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
  ☆91Updated 10 months ago
• kuixu / PrismNet
  Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
  ☆64Updated last year
• MedChaabane / DeepBind-with-PyTorch
  CNN architecture for predicting DNA binding sites for Transcription Factors
  ☆52Updated 6 years ago
• poseidonchan / TAPE
  Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
  ☆56Updated last year
• DC-Jade / bioinfo_pi_atlas
  ☆50Updated last year
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆62Updated 2 years ago
• ZJUFanLab / bulk2space
  a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …
  ☆120Updated 2 years ago
• feifei9606 / Awesome-Bioinformatics-CN
  生物信息学软件，资源和工具库的精选列表
  ☆109Updated 3 years ago
• zpliulab / GENELink
  ☆31Updated 2 years ago
• hosseinshn / MOLI
  MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction
  ☆54Updated 4 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆42Updated last year