Conta is an R package to detect cross contamination and source of contamination
☆11Feb 25, 2020Updated 6 years ago
Alternatives and similar repositories for conta
Users that are interested in conta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104☆19Jul 14, 2026Updated 3 months ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆13Aug 4, 2020Updated 6 years ago
- ☆10Oct 13, 2026Updated 3 weeks ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆40Feb 20, 2019Updated 7 years ago
- Multiplex Primer Design☆21Oct 30, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- likelihood calculations over a tree to support ancient DNA Y chr analysis and more☆11Jul 4, 2023Updated 3 years ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆11Nov 10, 2025Updated last year
- ABRA2☆96Dec 2, 2022Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- A simple Bisulfite FastQ Read Simulator (BiQRS)☆14Jun 11, 2026Updated 5 months ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 3 years ago
- NGS duplicate marking☆20Apr 6, 2021Updated 5 years ago
- runjob is a program for managing a group of related jobs running on a compute cluster☆11Jul 26, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- 用每个窗口的read数作为特征、胎儿浓度作为标签，训练神经网络模型；训练完成的神经网络模型可用于NIPT胎儿浓度的预测☆11Jun 10, 2022Updated 4 years ago
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 5 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated 3 months ago
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Aug 23, 2019Updated 7 years ago
- HgvsGo is a program designed for analyzing "c." and "p." HGVS (Human Genome Variation Society) notations for single nucleotide variations…☆17Nov 20, 2024Updated last year
- methtuple is a methylation caller for methylation events that co-occur on the same DNA fragment from high-throughput bisulfite sequencing…☆16Apr 5, 2022Updated 4 years ago
- Cross-platform GUI desktop application for making biological heatmaps☆19Nov 10, 2022Updated 4 years ago
- Inferring expressed genes by whole-genome sequencing of plasma DNA☆20May 23, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆17Apr 2, 2019Updated 7 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆22May 9, 2019Updated 7 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆19Jun 29, 2021Updated 5 years ago
- ☆10Feb 8, 2023Updated 3 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆19Oct 5, 2019Updated 7 years ago
- ☆14May 12, 2023Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 3 years ago
- range tree for interval query☆13Jul 10, 2019Updated 7 years ago
- Kraken2 Server☆23Nov 24, 2025Updated 11 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆17Aug 8, 2025Updated last year
- VM Deploy for HPC-Cloud☆19May 16, 2019Updated 7 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated 2 years ago
- Read level DNA methylation analysis of bisulfite converted sequencing data☆20Feb 23, 2026Updated 8 months ago
- ☆16May 8, 2023Updated 3 years ago
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated last year
Are these results useful?