Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes
β31Oct 14, 2026Updated 2 weeks ago
Alternatives and similar repositories for orphos
Users that are interested in orphos are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.β20Sep 1, 2026Updated last month
- Homology-based ANI estimation at unprecedented scalesπ¦β25Oct 4, 2026Updated 3 weeks ago
- Query sequence database by HMMs arranged in predefined synteny structureβ21Jun 23, 2026Updated 4 months ago
- Fast sequence distance estimatesβ35Updated this week
- A Python interface to gb-io, a fast GenBank parser written in Rust.β25May 21, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- β20Sep 16, 2026Updated last month
- Python and Rust library for loading, saving, and manipulating taxonomic treesβ54Updated this week
- Just another minhash implementation.β13Updated this week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.β29Aug 20, 2025Updated last year
- Nail is an Alignment Inference tooLβ71Oct 18, 2026Updated last week
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BEDβ24Sep 3, 2026Updated last month
- Skiver: Reference-free quality control of (meta)genomic sequencing datasets using (k, v)-mer sketchesβ13Aug 19, 2026Updated 2 months ago
- Measure research software reach without hand-counting the internet. Dated snapshots, legit totals, grant-ready reports.β26Oct 1, 2026Updated 3 weeks ago
- k-mers and the likeβ22Oct 18, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Split k-mer analysis β version 2β109Oct 20, 2026Updated last week
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes β and raw sequencing β¦β36Oct 14, 2026Updated 2 weeks ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.β64Mar 25, 2026Updated 7 months ago
- Efficient phylogenetic tree inference for massive taxonomic datasetsβ148Apr 6, 2025Updated last year
- Host depletion optimised for clinical metagenomic sequencing applicationsβ19Jul 9, 2026Updated 3 months ago
- Build phylogenomic datasets in secondsβ15Updated this week
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.β25Nov 25, 2025Updated 11 months ago
- THRESHER is a framework that replaces fixed cutoffs with data-driven phylothresholds - the SNP thresholds corrected for phylogenetic topoβ¦β14Oct 17, 2026Updated last week
- Tearing through FASTA/Q sequencesβ42Updated this week
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fast DNA search and [host] depletion using minimizersβ128Updated this week
- TAXnomic Profile Aggregation and STAndardisationβ43May 2, 2026Updated 5 months ago
- Local alignment search with k-bounded matching statistics.β24Oct 12, 2026Updated 2 weeks ago
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic comparβ¦β33Sep 18, 2026Updated last month
- Functions to manipulate and visualize microbial community dataβ12Sep 15, 2023Updated 3 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLogβ23Updated this week
- LexicMap: efficient sequence alignment against millions of prokaryotic genomesβ227Oct 21, 2026Updated last week
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes froβ¦β176Oct 11, 2026Updated 2 weeks ago
- Short-read assembler for bacterial genomics based on a de Bruijn graph written in Rust π¦β16Oct 20, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to theβ¦β13Jan 19, 2026Updated 9 months ago
- A Pyrodigal extension to predict genes in RNA viruses.β12May 3, 2026Updated 5 months ago
- Ultra-rapid detection of viral variants directly from sequencing dataβ49Sep 16, 2026Updated last month
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale dβ¦β270Oct 14, 2026Updated 2 weeks ago
- Simple Python interface to CoverM's fast coverage estimation functionsβ11Dec 20, 2024Updated last year
- RNA virus analysis toolkitβ25Oct 14, 2026Updated 2 weeks ago
- β19Mar 20, 2025Updated last year