tdseher / simple-codon-optimizer
Simple Python program to perform codon optimization or heterology calculations.
☆10Updated 4 years ago
Alternatives and similar repositories for simple-codon-optimizer:
Users that are interested in simple-codon-optimizer are comparing it to the libraries listed below
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 4 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆26Updated 11 months ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆16Updated 2 months ago
- Python bindings for the TaxonKit library☆36Updated 2 weeks ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆9Updated 4 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆11Updated 2 months ago
- ☆16Updated last year
- A pipeline for whole genome assembly☆16Updated 3 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15Updated 5 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 5 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆20Updated 9 months ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆14Updated 3 years ago
- k-mer similarity analysis pipeline☆21Updated 3 months ago
- ☆15Updated last year
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- cgat-apps repository☆34Updated 2 weeks ago
- finding conserved regions in highly diverse genomes☆15Updated 8 months ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 6 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- FREE Divergence Error-Correcting DNA Barcodes☆8Updated 6 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 7 months ago
- Mutation tracker for microbial genomes☆15Updated 4 years ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago