Alternatives and similar repositories for FisherExact:

Users that are interested in FisherExact are comparing it to the libraries listed below

• kylessmith / dynamicTreeCut
  Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
  ☆40Updated 3 years ago
• BenjaminDoran / unidip
  Python port of the Unidip clustering algorithm from: http://www.kdd.org/kdd2016/subtopic/view/skinny-dip-clustering-in-a-sea-of-noise
  ☆36Updated last year
• KlugerLab / pyFIt-SNE
  Python Wrapper for FIt-SNE
  ☆45Updated 3 years ago
• adrianveres / polo
  Python Optimal Leaf Ordering for Hierarchical Clustering
  ☆21Updated 7 years ago
• greenelab / DAPS
  Denoising Autoencoders for Phenotype Stratification
  ☆41Updated 6 years ago
• IlyaLab / CombiningDependentPvaluesUsingEBM
  Python, R and Matlab implementation of Brown's Method to combine dependent P-values
  ☆25Updated 7 years ago
• unlearnai / genemunge
  Tools for munging genomic data
  ☆21Updated 5 years ago
• ulfaslak / py_pcha
  Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.
  ☆38Updated 2 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆64Updated 6 months ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆47Updated 5 years ago
• MaayanLab / clustergrammer-widget
  The Clustergrammer interactive Jupyter notebook widget
  ☆47Updated 2 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆59Updated 4 years ago
• fastcluster / fastcluster
  Fast hierarchical clustering routines for R and Python.
  ☆142Updated 7 months ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• nfusi / qvalue
  Converts p-values in q-values, see (Storey and Tibshirani, 2003)
  ☆29Updated 7 years ago
• rmenegaux / fastDNA
  ☆24Updated 3 years ago
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 2 years ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 2 years ago
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆26Updated 5 years ago
• phiweger / nanotext
  Proteins as words, genomes as documents.
  ☆20Updated 4 years ago
• ppsp-team / StratiPy
  Graph regularized nonnegative matrix factorization (GNMF) in Python
  ☆45Updated 4 years ago
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆87Updated 4 years ago
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated last year
• pachterlab / MCML
  ☆33Updated 3 years ago
• WarrenWeckesser / heatmapcluster
  A python library for generating a clustered heatmap with dendrograms.
  ☆32Updated 2 years ago
• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆103Updated 6 years ago
• nickFurlotte / pylmm
  A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.
  ☆43Updated 9 years ago
• jmschrei / avocado
  Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…
  ☆117Updated 2 years ago
• hammerlab / pygdc
  Python API for Genomic Data Commons
  ☆18Updated 8 years ago
• schlegelp / catheat
  Plot categorical heatmaps with seaborn
  ☆18Updated 2 years ago