PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as it provides an interface to BioC.
☆27Sep 22, 2018Updated 8 years ago
Alternatives and similar repositories for PubMedPortable
Users that are interested in PubMedPortable are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆12Jul 17, 2026Updated 2 months ago
- Simple scVI implementation☆13Aug 31, 2026Updated 3 weeks ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- Framework for information extraction from tables☆42Apr 15, 2019Updated 7 years ago
- Code to build the Target Central Resource Database (TCRD).☆11Jul 20, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python bindings for the Unitex/GramLab corpus processor☆10Nov 25, 2022Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- Scripts written to demo R for Biochemists☆10Jan 12, 2026Updated 8 months ago
- ☆22Apr 16, 2024Updated 2 years ago
- In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data☆18Jan 19, 2018Updated 8 years ago
- Code for Estimating Multi-cause Treatment Effects via Single-cause Perturbation (NeurIPS 2021)☆14Jan 5, 2022Updated 4 years ago
- 微信小程序自定义modal弹窗,可带图片☆21Jul 16, 2018Updated 8 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Apr 6, 2019Updated 7 years ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The OpenTrials data collectors + warehouse schema definition.☆18May 2, 2017Updated 9 years ago
- Microbiome Informatics - API and service usage examples☆13Oct 7, 2021Updated 4 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆38Sep 16, 2025Updated last year
- This is the open source repository of my Recursive Neural Network for the BioCreative 6 track5 - chemprot task.☆11Feb 22, 2019Updated 7 years ago
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 8 years ago
- Analysis code for knowledge discovery project☆12Sep 25, 2018Updated 8 years ago
- ☆16Jun 17, 2024Updated 2 years ago
- An RNN based encoder-decoder model for Machine Translation☆14May 7, 2015Updated 11 years ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Feb 11, 2026Updated 7 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A Simple Text Mining Tool for Analyzing Research Paper Abstracts☆14Aug 2, 2015Updated 11 years ago
- Python tools for text☆16May 8, 2020Updated 6 years ago
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Aug 25, 2023Updated 3 years ago
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022☆18Oct 20, 2022Updated 3 years ago
- ☆10May 17, 2017Updated 9 years ago
- Model for processing text sequences with coreference annotations☆14Nov 29, 2018Updated 7 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆11Sep 12, 2017Updated 9 years ago
- Train deep neural language models as described in this paper "Deep Neural Language Models for Machine Translation" http://www.aclweb.org/…☆14Jul 31, 2015Updated 11 years ago
- a place for semiconductor models☆14Mar 5, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆39Nov 16, 2020Updated 5 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Pre-trained models for Datumbox Machine Learning Framework.☆15Mar 23, 2021Updated 5 years ago
- ☆12Mar 1, 2022Updated 4 years ago
- R scripts to calculate water quality trends and the water quality index at selected ambient monitoring stations in B.C.☆12Dec 16, 2020Updated 5 years ago
- ☆15Sep 20, 2018Updated 8 years ago
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago