PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as it provides an interface to BioC.
☆27Sep 22, 2018Updated 7 years ago
Alternatives and similar repositories for PubMedPortable
Users that are interested in PubMedPortable are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Processing OpenCitations Data☆20Aug 17, 2017Updated 8 years ago
- ☆13Jan 4, 2022Updated 4 years ago
- Python Client for the Lagotto API☆15Mar 20, 2017Updated 9 years ago
- Framework for information extraction from tables☆41Apr 15, 2019Updated 7 years ago
- Code to build the Target Central Resource Database (TCRD).☆11Jul 20, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Theories of social science expressed in Catlab.jl formalisms☆16Mar 21, 2021Updated 5 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- Enrich your data☆18Apr 2, 2022Updated 4 years ago
- ☆14Apr 13, 2026Updated 3 months ago
- Announcements related to ontology changes that may impact groups using GO, such as obsoletions, merges, etc.☆16Nov 22, 2022Updated 3 years ago
- In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data☆18Jan 19, 2018Updated 8 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Apr 6, 2019Updated 7 years ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- mwclient wrapper☆22Dec 25, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The OpenTrials data collectors + warehouse schema definition.☆18May 2, 2017Updated 9 years ago
- This is the open source repository of my Recursive Neural Network for the BioCreative 6 track5 - chemprot task.☆11Feb 22, 2019Updated 7 years ago
- ☆10Apr 10, 2016Updated 10 years ago
- Analysis code for knowledge discovery project☆12Sep 25, 2018Updated 7 years ago
- ☆16Jun 17, 2024Updated 2 years ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Feb 11, 2026Updated 5 months ago
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022☆18Oct 20, 2022Updated 3 years ago
- Code for Generalized Entropy Regularization paper☆14May 2, 2020Updated 6 years ago
- ☆10May 17, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 8 years ago
- ☆39Nov 16, 2020Updated 5 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Sphinx documentation source for a computational genomics tutorial.☆36Dec 25, 2020Updated 5 years ago
- ☆15Sep 20, 2018Updated 7 years ago
- Functional and structural analysis of tables in research papers (Table disentangling)☆21Aug 7, 2017Updated 8 years ago
- mapped with CPT and ICD codes☆16Dec 7, 2015Updated 10 years ago
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- A literature review for constructing and using knowledge graphs in a biomedical setting.☆11May 22, 2020Updated 6 years ago
- Web interface that allows users to perform computer-assisted text annotation☆14Jan 19, 2023Updated 3 years ago
- DeepDive Biomedical Tools☆15Apr 3, 2017Updated 9 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Apr 18, 2022Updated 4 years ago
- R package and Shiny app providing functions for scaling relative copy number to absolute values for shallow whole genome sequencing of ca…☆12Aug 29, 2025Updated 10 months ago
- ☆12Mar 31, 2020Updated 6 years ago