KerstenDoering / PubMedPortable
PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as it provides an interface to BioC.
☆25Updated 6 years ago
Alternatives and similar repositories for PubMedPortable:
Users that are interested in PubMedPortable are comparing it to the libraries listed below
- Retrieve and process PubTator annotations☆44Updated last year
- ☆41Updated 5 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- Python library for working with BioC files☆13Updated 6 years ago
- ☆24Updated 4 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆27Updated 8 years ago
- ☆22Updated 2 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆32Updated 7 years ago
- a module to calculate the MeSH similarity☆26Updated 3 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- A Standard Database for Drug Repositioning☆18Updated 7 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- Python library for work with BioCreative files☆13Updated 6 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Grounding of biomedical named entities with contextual disambiguation☆43Updated 4 months ago
- Biomedical wordlists (of drugs, genes, etc) for several text mining projects☆18Updated last year
- Ontology cross-reference and mapping service☆18Updated 8 months ago
- CoCoScore: context-aware co-occurrence scores for text mining applications☆18Updated 5 years ago
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 8 years ago
- 🪝 What's the latest version for each database?☆27Updated last week
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- Literature mining for T cell relations☆23Updated 2 years ago
- ☆65Updated 2 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆58Updated last year
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆36Updated last year
- ☆24Updated 4 years ago
- ☆52Updated 4 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago