PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as it provides an interface to BioC.
☆27Sep 22, 2018Updated 7 years ago
Alternatives and similar repositories for PubMedPortable
Users that are interested in PubMedPortable are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code to build the Target Central Resource Database (TCRD).☆11Jul 20, 2021Updated 4 years ago
- Framework for information extraction from tables☆40Apr 15, 2019Updated 6 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Feb 11, 2026Updated last month
- In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data☆18Jan 19, 2018Updated 8 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Apr 6, 2019Updated 6 years ago
- Javascript based component for highlighting text-mined annotations of different semantic types in a full text article identified by a PMC…☆11Nov 29, 2016Updated 9 years ago
- Python bindings for the Unitex/GramLab corpus processor☆10Nov 25, 2022Updated 3 years ago
- The OpenTrials data collectors + warehouse schema definition.☆18May 2, 2017Updated 8 years ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- This is the open source repository of my Recursive Neural Network for the BioCreative 6 track5 - chemprot task.☆11Feb 22, 2019Updated 7 years ago
- ☆16Jun 17, 2024Updated last year
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 7 years ago
- Analysis code for knowledge discovery project☆12Sep 25, 2018Updated 7 years ago
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Aug 25, 2023Updated 2 years ago
- Absolute Copy Number Estimation using low-coverage whole genome sequencing data☆19Oct 17, 2025Updated 5 months ago
- Model for processing text sequences with coreference annotations☆14Nov 29, 2018Updated 7 years ago
- A documentation for FAIR GPT, a virtual RDM consultant☆15Oct 10, 2024Updated last year
- a place for semiconductor models☆14Mar 5, 2018Updated 8 years ago
- argparse to Markdown for your README.md!☆17Dec 2, 2021Updated 4 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 7 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Sphinx documentation source for a computational genomics tutorial.☆36Dec 25, 2020Updated 5 years ago
- ☆12Mar 1, 2022Updated 4 years ago
- Functional and structural analysis of tables in research papers (Table disentangling)☆20Aug 7, 2017Updated 8 years ago
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022☆17Oct 20, 2022Updated 3 years ago
- ☆37Nov 16, 2020Updated 5 years ago
- Web interface that allows users to perform computer-assisted text annotation☆15Jan 19, 2023Updated 3 years ago
- ☆10Apr 10, 2016Updated 9 years ago
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- DeepDive Biomedical Tools☆15Apr 3, 2017Updated 8 years ago
- Learning with Partial Supervision☆10Sep 21, 2023Updated 2 years ago
- A sparsity aware implementation of "Biological Network Comparison Using Graphlet Degree Distribution" (Bioinformatics 2007)☆26Aug 11, 2022Updated 3 years ago
- A command line Java application for parsing MEDLINE XML files and inserting the data into a relational database☆19Aug 9, 2023Updated 2 years ago
- The OpenAPI Specification Repository☆11Jul 12, 2023Updated 2 years ago
- ZubairGPT is a chrome extention which contains useful prompts for ChatGPT☆20May 9, 2023Updated 2 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Sep 7, 2022Updated 3 years ago
- Render NumPy arrays as HTML tables☆40Nov 16, 2021Updated 4 years ago