KerstenDoering / PubMedPortableLinks
PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as it provides an interface to BioC.
β27Updated 7 years ago
Alternatives and similar repositories for PubMedPortable
Users that are interested in PubMedPortable are comparing it to the libraries listed below
Sorting:
- Retrieve and process PubTator annotationsβ44Updated 2 years ago
- Extracting biomedical relationships from literature with Snorkel πβ58Updated 4 years ago
- β23Updated 2 years ago
- A framework for keeping biomedical text mining result up-to-dateβ42Updated 5 years ago
- β42Updated 5 years ago
- β24Updated 5 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giβ¦β45Updated 3 years ago
- β70Updated 3 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposingβ33Updated 8 years ago
- a module to calculate the MeSH similarityβ27Updated 4 years ago
- Repository for student projects within biomedical text mining from Lund Universityβ57Updated 2 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.govβ27Updated 9 years ago
- Data structures and code to read/write BioC XML and Json.β33Updated 2 years ago
- A Standard Database for Drug Repositioningβ19Updated 8 years ago
- Hetnets in Python (relocated from dhimmel/hetio)β99Updated 3 months ago
- Use machine learning to find patterns of similar eligibility protocol criteria for clinical trialsβ19Updated 6 years ago
- Grounding of biomedical named entities with contextual disambiguationβ45Updated this week
- a module to calculate the MeSH similarityβ26Updated 4 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towaβ¦β15Updated 6 years ago
- πͺ What's the latest version for each database?β27Updated this week
- Python library for work with BioCreative filesβ13Updated 7 years ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Modelsβ196Updated last year
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseasesβ52Updated 4 months ago
- Public release of the DeepPhe analytic softwareβ30Updated last week
- Github repo for the Experimental Factor Ontology (EFO)β62Updated last week
- Text annotation tool for team collaborationβ43Updated last year
- A Python package to download full article PDFs from OA publicationsβ51Updated 10 months ago
- The symptom ontology was designed around the guiding concept of a symptom being: βA perceived change in function, sensation or appearanceβ¦β44Updated last year
- Literature mining for T cell relationsβ23Updated 3 years ago
- Biomedical wordlists (of drugs, genes, etc) for several text mining projectsβ18Updated 2 years ago