PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as it provides an interface to BioC.
☆27Sep 22, 2018Updated 7 years ago
Alternatives and similar repositories for PubMedPortable
Users that are interested in PubMedPortable are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆11Jun 18, 2025Updated 10 months ago
- Code to build the Target Central Resource Database (TCRD).☆11Jul 20, 2021Updated 4 years ago
- Framework for information extraction from tables☆41Apr 15, 2019Updated 7 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Feb 11, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Announcements related to ontology changes that may impact groups using GO, such as obsoletions, merges, etc.☆16Nov 22, 2022Updated 3 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Apr 6, 2019Updated 7 years ago
- 微信小程序自定义modal弹窗，可带图片☆21Jul 16, 2018Updated 7 years ago
- Python bindings for the Unitex/GramLab corpus processor☆10Nov 25, 2022Updated 3 years ago
- The OpenTrials data collectors + warehouse schema definition.☆18May 2, 2017Updated 9 years ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- Schemata for tabular data sets in Julia.☆18Sep 15, 2021Updated 4 years ago
- ☆16Jun 17, 2024Updated last year
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysis code for knowledge discovery project☆12Sep 25, 2018Updated 7 years ago
- pialign - A Phrasal ITG Aligner☆24Apr 29, 2019Updated 7 years ago
- Absolute Copy Number Estimation using low-coverage whole genome sequencing data☆20Oct 17, 2025Updated 6 months ago
- Model for processing text sequences with coreference annotations☆14Nov 29, 2018Updated 7 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 8 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Sphinx documentation source for a computational genomics tutorial.☆36Dec 25, 2020Updated 5 years ago
- Functional and structural analysis of tables in research papers (Table disentangling)☆21Aug 7, 2017Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- mapped with CPT and ICD codes☆16Dec 7, 2015Updated 10 years ago
- ☆15Sep 20, 2018Updated 7 years ago
- ☆38Nov 16, 2020Updated 5 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- ☆10Apr 10, 2016Updated 10 years ago
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- Learning with Partial Supervision☆10Sep 21, 2023Updated 2 years ago
- Pre-trained models for Datumbox Machine Learning Framework.☆15Mar 23, 2021Updated 5 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆176Apr 18, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A sparsity aware implementation of "Biological Network Comparison Using Graphlet Degree Distribution" (Bioinformatics 2007)☆26Aug 11, 2022Updated 3 years ago
- Framework for running text mining tools on latest publications. Main page at:☆15Jul 13, 2022Updated 3 years ago
- ☆12Mar 31, 2020Updated 6 years ago
- The OpenAPI Specification Repository☆12Jul 12, 2023Updated 2 years ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆18Dec 16, 2025Updated 4 months ago
- ZubairGPT is a chrome extention which contains useful prompts for ChatGPT☆20May 9, 2023Updated 2 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Sep 7, 2022Updated 3 years ago