PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as it provides an interface to BioC.
☆27Sep 22, 2018Updated 8 years ago
Alternatives and similar repositories for PubMedPortable
Users that are interested in PubMedPortable are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆12Jul 17, 2026Updated 3 months ago
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 8 years ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- ☆13Jan 4, 2022Updated 4 years ago
- ☆15Jun 9, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bycon - A Python Based Beacon API (beacon-project.io) implementation leveraging the Progenetix (progenetix.org) data model☆10May 12, 2026Updated 5 months ago
- Code to build the Target Central Resource Database (TCRD).☆11Jul 20, 2021Updated 5 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- Scripts written to demo R for Biochemists☆10Jan 12, 2026Updated 9 months ago
- ☆14Aug 24, 2026Updated last month
- Theories of social science expressed in Catlab.jl formalisms☆16Mar 21, 2021Updated 5 years ago
- ☆22Apr 16, 2024Updated 2 years ago
- In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data☆18Jan 19, 2018Updated 8 years ago
- a Python 3 command-line tool to maintain a DB mirror of MEDLINE (https://pypi.python.org/pypi/medic) - ALERT: As I have moved out of scie…☆25Sep 28, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 微信小程序自定义modal弹窗，可带图片☆21Jul 16, 2018Updated 8 years ago
- Data structures and code to read/write BioC XML and Json.☆34Aug 21, 2023Updated 3 years ago
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆57Aug 26, 2018Updated 8 years ago
- Package for heterogeneous causal effects in the presence of imperfect compliance (e.g., instrumental variables, fuzzy regression disconti…☆19Mar 6, 2024Updated 2 years ago
- Neural Network for Polygenic score analysis☆16Jan 25, 2023Updated 3 years ago
- Microbiome Informatics - API and service usage examples☆13Oct 7, 2021Updated 5 years ago
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 8 years ago
- A documentation for FAIR GPT, a virtual RDM consultant☆17Oct 10, 2024Updated 2 years ago
- ☆10Apr 10, 2016Updated 10 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- The OpenTrials data collectors + warehouse schema definition.☆18May 2, 2017Updated 9 years ago
- An RNN based encoder-decoder model for Machine Translation☆14May 7, 2015Updated 11 years ago
- Schemata for tabular data sets in Julia.☆18Sep 15, 2021Updated 5 years ago
- ☆16Jun 17, 2024Updated 2 years ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Feb 11, 2026Updated 8 months ago
- Matlab Evaluation codes for the 2nd CAFA experiment☆14Nov 27, 2023Updated 2 years ago
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022☆18Oct 20, 2022Updated 3 years ago
- Code for Generalized Entropy Regularization paper☆14May 2, 2020Updated 6 years ago
- Model for processing text sequences with coreference annotations☆14Nov 29, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆11Sep 12, 2017Updated 9 years ago
- Train deep neural language models as described in this paper "Deep Neural Language Models for Machine Translation" http://www.aclweb.org/…☆14Jul 31, 2015Updated 11 years ago
- argparse to Markdown for your README.md!☆17Dec 2, 2021Updated 4 years ago
- Pre-trained models for Datumbox Machine Learning Framework.☆15Mar 23, 2021Updated 5 years ago
- ☆39Nov 16, 2020Updated 5 years ago
- R scripts to calculate water quality trends and the water quality index at selected ambient monitoring stations in B.C.☆12Dec 16, 2020Updated 5 years ago
- ☆15Sep 20, 2018Updated 8 years ago