jeremyjyang / BioClients
Python package for access to online biomedical resources, usually via REST APIs.
β16Updated 4 months ago
Alternatives and similar repositories for BioClients:
Users that are interested in BioClients are comparing it to the libraries listed below
- πͺ What's the latest version for each database?β27Updated this week
- A Standard Database for Drug Repositioningβ18Updated 7 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.β57Updated last year
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.govβ26Updated 8 years ago
- β55Updated 4 years ago
- Repository for storing code related to the paper by Zdrazil B., Richter L., Brown N., and Guha R. "Moving Targets: Monitoring Target Trenβ¦β9Updated 4 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)β21Updated 3 years ago
- β11Updated 5 years ago
- β19Updated 4 years ago
- β22Updated last year
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bβ¦β17Updated 2 months ago
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.β16Updated 6 months ago
- A Python package for drug discovery by analyzing causal paths on multiscale networksβ26Updated 6 months ago
- Method for drug repurposing from knowledge graphs and literatureβ34Updated 4 years ago
- Network representation learning on drug-target-side effects-indication graphs for side effect predictionβ13Updated 4 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)β19Updated 6 months ago
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligenceβ¦β32Updated 5 months ago
- The Clinical Trials Knowledge Graphβ54Updated last year
- Don't worry about DrugBank licensing - write code that knows how to download it automaticallyβ42Updated this week
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giβ¦β45Updated 2 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposingβ32Updated 7 years ago
- β17Updated 2 months ago
- This repository contains the code accompanying the paper "Learning Informative Representations of Biomedical Relations with Latent Variabβ¦β14Updated 3 years ago
- Adverse Outcome Pathway Ontologyβ11Updated 9 months ago
- Biomedical Term Annotatorβ9Updated 4 months ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"β20Updated last year
- β65Updated last year
- Python script for processing DrugBank XML to MySQL-ready CSV filesβ16Updated 7 years ago
- Ten quick tips to finish that manuscript that's 90% complete.β13Updated 2 years ago
- π Generation and Applications of Knowledge Graphs in Systems and Networks Biologyβ29Updated 5 years ago