Aitslab / BioNLPLinks
Repository for student projects within biomedical text mining from Lund University
☆54Updated 2 years ago
Alternatives and similar repositories for BioNLP
Users that are interested in BioNLP are comparing it to the libraries listed below
Sorting:
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 4 years ago
- ☆152Updated last year
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆178Updated 3 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated 2 years ago
- ☆41Updated 5 years ago
- ☆98Updated 3 years ago
- Retrieve and process PubTator annotations☆44Updated last year
- Data structures and code to read/write BioC XML and Json.☆33Updated last year
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆190Updated last year
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆149Updated last year
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆194Updated 2 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆55Updated 2 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆168Updated 2 years ago
- ☆32Updated last year
- a customzable pipeline for information extraction☆17Updated last month
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 6 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆80Updated 3 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32Updated 2 years ago
- ☆67Updated 3 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- ☆55Updated 5 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆101Updated 4 years ago
- A project for developing transformer-based models for clinical relation extraction☆129Updated last year