Aitslab / BioNLP
Repository for student projects within biomedical text mining from Lund University
☆50Updated last year
Alternatives and similar repositories for BioNLP:
Users that are interested in BioNLP are comparing it to the libraries listed below
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆27Updated 3 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- Extracting biomedical relationships from literature with Snorkel 🏊☆59Updated 3 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Retrieve and process PubTator annotations☆43Updated last year
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- ☆96Updated 2 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆174Updated 2 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆55Updated last year
- Bio relation extraction labeled dataset☆43Updated 2 years ago
- ☆40Updated 4 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- a module to calculate the MeSH similarity☆24Updated 3 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- ☆31Updated 10 months ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆146Updated last year
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- ☆71Updated last year
- ☆145Updated last year
- Abbreviation definition dection library trained on PubMed abstracts☆45Updated 4 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆180Updated last year
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- ☆52Updated 4 years ago
- ☆35Updated 4 years ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- ☆64Updated 2 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆161Updated last year