Repository for student projects within biomedical text mining from Lund University
☆57May 26, 2023Updated 3 years ago
Alternatives and similar repositories for BioNLP
Users that are interested in BioNLP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Sep 18, 2018Updated 7 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆13Mar 7, 2023Updated 3 years ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Mar 15, 2018Updated 8 years ago
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆29Jul 7, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆135Jul 25, 2024Updated last year
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive…☆18Aug 7, 2024Updated last year
- Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology☆17May 3, 2022Updated 4 years ago
- Tools for curating biomedical training data for large-scale language modeling☆498Dec 9, 2024Updated last year
- ☆50May 29, 2022Updated 4 years ago
- Package that facilitates pulling database entries from KEGG via its REST API☆12May 19, 2026Updated last week
- Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs☆63Dec 8, 2022Updated 3 years ago
- MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)☆18Oct 13, 2022Updated 3 years ago
- RILseq computational protocol☆11Apr 3, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- A tool to expand abbreviations detected within a string. Designed for scientific writing.☆13Oct 6, 2017Updated 8 years ago
- Code for Attention Word Embeddings☆20Oct 31, 2020Updated 5 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42May 31, 2020Updated 5 years ago
- ☆12Aug 17, 2020Updated 5 years ago
- UniHPF : Universal Healthcare Predictive Framework with Zero Domain Knowledge☆13Nov 16, 2023Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆205Mar 28, 2024Updated 2 years ago
- MedXN is a medication normalization system built upon Apache UIMA framework.☆25Jan 24, 2024Updated 2 years ago
- Remove and restore masks for layers that do not support masking☆16Jan 22, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A simple chess engine☆11Dec 16, 2018Updated 7 years ago
- ☆101Feb 25, 2022Updated 4 years ago
- A graph visualization of popular graph technologies and companies☆19May 27, 2022Updated 4 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- Risk Minimization Algorithms in Structured Prediction (JMLR 2016)☆13Jan 26, 2017Updated 9 years ago
- Argumentation Mining Tool for Lawyers☆15May 18, 2021Updated 5 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆32Dec 3, 2019Updated 6 years ago
- ☆22Jun 2, 2017Updated 8 years ago
- 🍊🔬 Bioinformatics add-on for Orange3☆24May 22, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Abbreviation definition dection library trained on PubMed abstracts☆51Jul 6, 2020Updated 5 years ago
- Generating graph structures from OWL ontologies☆12Nov 21, 2017Updated 8 years ago
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆15Sep 2, 2021Updated 4 years ago
- Token and Sentence level embeddings from BioBERT model☆30Jul 25, 2024Updated last year
- Microsatellite Instability Classification using Multiple Instance Learning☆28Mar 3, 2025Updated last year
- faster haplotype-based admixture inference and dating software☆11Nov 25, 2025Updated 6 months ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆63Jul 1, 2022Updated 3 years ago