Repository for student projects within biomedical text mining from Lund University
☆57May 26, 2023Updated 2 years ago
Alternatives and similar repositories for BioNLP
Users that are interested in BioNLP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Sep 18, 2018Updated 7 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 3 years ago
- Datasets, mainly related to Entity Linking and biological corpus.☆10May 24, 2020Updated 5 years ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Mar 15, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Cross-domain data integration for named entity disambiguation in biomedical text☆11Dec 15, 2021Updated 4 years ago
- ☆17Oct 24, 2020Updated 5 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆135Jul 25, 2024Updated last year
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive…☆18Aug 7, 2024Updated last year
- Tools for curating biomedical training data for large-scale language modeling☆498Dec 9, 2024Updated last year
- ☆13Dec 5, 2024Updated last year
- ☆50May 29, 2022Updated 3 years ago
- Package that facilitates pulling database entries from KEGG via its REST API☆12Mar 20, 2026Updated last month
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- EViS: an Enhanced Virtual Screening Approach based on Pocket Ligand Similarity☆14Dec 7, 2021Updated 4 years ago
- MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)☆18Oct 13, 2022Updated 3 years ago
- RILseq computational protocol☆11Apr 3, 2022Updated 4 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- A tool to expand abbreviations detected within a string. Designed for scientific writing.☆13Oct 6, 2017Updated 8 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42May 31, 2020Updated 5 years ago
- ☆12Aug 17, 2020Updated 5 years ago
- UniHPF : Universal Healthcare Predictive Framework with Zero Domain Knowledge☆13Nov 16, 2023Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆204Mar 28, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- MedXN is a medication normalization system built upon Apache UIMA framework.☆25Jan 24, 2024Updated 2 years ago
- Remove and restore masks for layers that do not support masking☆16Jan 22, 2022Updated 4 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- Protein Graph in Python for MetaPath-ML and more.☆20Jun 20, 2025Updated 10 months ago
- Argumentation Mining Tool for Lawyers☆15May 18, 2021Updated 4 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆32Dec 3, 2019Updated 6 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆51Jul 6, 2020Updated 5 years ago
- Token and Sentence level embeddings from BioBERT model☆30Jul 25, 2024Updated last year
- Microsatellite Instability Classification using Multiple Instance Learning☆28Mar 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- faster haplotype-based admixture inference and dating software☆10Nov 25, 2025Updated 5 months ago
- Aho-Corasick algorithm as implemented in Java by Danny Yoo, with little improvements☆26May 20, 2014Updated 11 years ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆17Mar 2, 2026Updated 2 months ago
- Using Huggingface to generate relation expressions☆15Jan 15, 2021Updated 5 years ago
- This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical name…☆37Mar 5, 2019Updated 7 years ago
- UCSC Genome Browser Docker Image☆17May 12, 2022Updated 3 years ago
- ☆123May 2, 2018Updated 8 years ago