Repository for student projects within biomedical text mining from Lund University
☆56May 26, 2023Updated 3 years ago
Alternatives and similar repositories for BioNLP
Users that are interested in BioNLP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆37Sep 18, 2018Updated 8 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆13Mar 7, 2023Updated 3 years ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Mar 15, 2018Updated 8 years ago
- Cross-domain data integration for named entity disambiguation in biomedical text☆11Dec 15, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆17Oct 24, 2020Updated 5 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆136Jul 25, 2024Updated 2 years ago
- Tools for curating biomedical training data for large-scale language modeling☆506Dec 9, 2024Updated last year
- ☆13May 24, 2026Updated 4 months ago
- ☆50May 29, 2022Updated 4 years ago
- Package that facilitates pulling database entries from KEGG via its REST API☆15Aug 12, 2026Updated last month
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive…☆18Aug 7, 2024Updated 2 years ago
- The CleanCoNLL dataset from our EMNLP 2023 paper where we corrected annotation errors and inconsistencies in CoNLL-03.☆25Jul 2, 2024Updated 2 years ago
- EViS: an Enhanced Virtual Screening Approach based on Pocket Ligand Similarity☆14Dec 7, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Business Rule Engine☆22Updated this week
- sci palettes for matplotlib/seaborn☆10Feb 14, 2022Updated 4 years ago
- ☆237Aug 15, 2017Updated 9 years ago
- MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)☆19Oct 13, 2022Updated 3 years ago
- Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs☆63Dec 8, 2022Updated 3 years ago
- RILseq computational protocol☆10Apr 3, 2022Updated 4 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- Cline Pass 上游控制台 —— 枚举/校验/钉住订阅模型背后的上游渠道 · 账号池轮询 · OpenAI 兼容代理（零依赖 Node）☆235Sep 11, 2026Updated 3 weeks ago
- UniHPF : Universal Healthcare Predictive Framework with Zero Domain Knowledge☆13Nov 16, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A tool to expand abbreviations detected within a string. Designed for scientific writing.☆13Oct 6, 2017Updated 9 years ago
- ☆12Aug 17, 2020Updated 6 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆206Mar 28, 2024Updated 2 years ago
- A simple chess engine☆11Dec 16, 2018Updated 7 years ago
- MedXN is a medication normalization system built upon Apache UIMA framework.☆25Jan 24, 2024Updated 2 years ago
- ☆101Feb 25, 2022Updated 4 years ago
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- ☆22Jun 2, 2017Updated 9 years ago
- Risk Minimization Algorithms in Structured Prediction (JMLR 2016)☆13Jan 26, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🍊🔬 Bioinformatics add-on for Orange3☆25Sep 16, 2026Updated 3 weeks ago
- Abbreviation definition dection library trained on PubMed abstracts☆51Jul 6, 2020Updated 6 years ago
- Generating graph structures from OWL ontologies☆13Nov 21, 2017Updated 8 years ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆64Jul 1, 2022Updated 4 years ago
- Token and Sentence level embeddings from BioBERT model☆30Jul 25, 2024Updated 2 years ago
- Effect of tokenization on transformers for biological sequence☆23Dec 31, 2025Updated 9 months ago
- Japanese Sentence Summarization with BERT☆49May 9, 2023Updated 3 years ago