greenelab / snorkeling
Extracting biomedical relationships from literature with Snorkel 🏊
☆59Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for snorkeling
- Named Entity Recognition for biomedical entities☆47Updated last year
- Retrieve and process PubTator annotations☆43Updated last year
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- ☆40Updated 4 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- Repository for student projects within biomedical text mining from Lund University☆51Updated last year
- Bio relation extraction labeled dataset☆42Updated 2 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆45Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆46Updated 2 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆37Updated 6 years ago
- Grounding of biomedical named entities with contextual disambiguation☆39Updated 3 weeks ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆41Updated 4 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆133Updated 3 months ago
- This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical name…☆36Updated 5 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated 11 months ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆27Updated 3 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆174Updated 2 years ago
- A framework for keeping biomedical text mining result up-to-date☆41Updated 4 years ago
- a module to calculate the MeSH similarity☆24Updated 2 years ago
- ☆70Updated 11 months ago
- ☆63Updated 2 years ago
- Python library for work with BioCreative files☆12Updated 6 years ago
- Python library for working with BioC files☆13Updated 6 years ago
- 🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019☆19Updated 5 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆53Updated last year
- Python library for converting between BioNLP formats☆20Updated last year
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago