greenelab / snorkeling
Extracting biomedical relationships from literature with Snorkel π
β58Updated 4 years ago
Alternatives and similar repositories for snorkeling:
Users that are interested in snorkeling are comparing it to the libraries listed below
- Retrieve and process PubTator annotationsβ44Updated last year
- Named Entity Recognition for biomedical entitiesβ47Updated 2 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work β¦β102Updated 4 years ago
- β41Updated 5 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towaβ¦β15Updated 5 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)β19Updated last year
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giβ¦β45Updated 2 years ago
- Python library for work with BioCreative filesβ13Updated 6 years ago
- Bio relation extraction labeled datasetβ44Updated 2 years ago
- β72Updated last year
- Data structures and code to read/write BioC XML and Json.β31Updated last year
- a module to calculate the MeSH similarityβ26Updated 3 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bioβ¦β36Updated 6 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasksβ41Updated 4 years ago
- a module to calculate the MeSH similarityβ24Updated 3 years ago
- Bioformer: an efficient BERT model for biomedical text miningβ54Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguationβ43Updated this week
- Abbreviation definition dection library trained on PubMed abstractsβ47Updated 4 years ago
- A framework for keeping biomedical text mining result up-to-dateβ42Updated 4 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)β33Updated 5 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERTβ28Updated 3 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.β33Updated 5 years ago
- Python library for working with BioC filesβ13Updated 6 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association dβ¦β18Updated 7 years ago
- This repository contains the code accompanying the paper "Learning Informative Representations of Biomedical Relations with Latent Variabβ¦β14Updated 3 years ago
- Python library for converting between BioNLP formatsβ21Updated last year
- Repository for student projects within biomedical text mining from Lund Universityβ52Updated last year
- A neural named entity recognition and multi-type normalization tool for biomedical text miningβ176Updated 2 years ago
- Turning Ontologies Plus Annotation Properties into Vectorsβ35Updated 4 years ago
- CollaboNet for Biomedical Named Entity Recognitionβ48Updated 6 years ago