greenelab / snorkelingLinks
Extracting biomedical relationships from literature with Snorkel 🏊
☆58Updated 4 years ago
Alternatives and similar repositories for snorkeling
Users that are interested in snorkeling are comparing it to the libraries listed below
Sorting:
- Retrieve and process PubTator annotations☆44Updated last year
- ☆41Updated 5 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Repository for student projects within biomedical text mining from Lund University☆54Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆33Updated last year
- ☆73Updated last year
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated 2 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆178Updated 3 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Updated 7 years ago
- Grounding of biomedical named entities with contextual disambiguation☆45Updated 2 months ago
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…☆26Updated 6 years ago
- Text annotation tool for team collaboration☆41Updated last year
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 8 years ago
- This repository contains the code accompanying the paper "Learning Informative Representations of Biomedical Relations with Latent Variab…☆14Updated 3 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 6 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- SNP Extraction Tool for Human Variations☆27Updated last year
- Abbreviation definition dection library trained on PubMed abstracts☆48Updated 5 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 6 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆96Updated last year
- A convolutional neural network model for relation extraction.☆13Updated 2 years ago
- A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows you…☆20Updated 8 years ago
- ☆22Updated 2 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- COVID-19 corpus with annotated biomedical entities.☆11Updated 4 years ago