Extracting biomedical relationships from literature with Snorkel π
β58Feb 1, 2021Updated 5 years ago
Alternatives and similar repositories for snorkeling
Users that are interested in snorkeling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Retrieve and process PubTator annotationsβ44Aug 10, 2023Updated 2 years ago
- β15Jun 9, 2018Updated 8 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association dβ¦β18Mar 15, 2018Updated 8 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work β¦β102Jul 14, 2020Updated 5 years ago
- CMOD Wikidata App built on Django Framework for editing Wikidata with existing GeneWIki bot codeβ12Feb 3, 2017Updated 9 years ago
- Simple, predictable pricing with DigitalOcean hosting β’ AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical nameβ¦β37Mar 5, 2019Updated 7 years ago
- Python library for work with BioCreative filesβ13Mar 28, 2018Updated 8 years ago
- Download and load MIMIC-III into a PostgreSQL DB on an Ubuntu VMβ10Jul 3, 2016Updated 9 years ago
- A CRF-biLSTM based Biomedical NER model in Bioinformatics 2018.β24Jul 31, 2018Updated 7 years ago
- β11Nov 19, 2020Updated 5 years ago
- β39Nov 16, 2020Updated 5 years ago
- Fragment Graphical Variational AutoEncoding for Screening and Generating Moleculesβ14Nov 21, 2022Updated 3 years ago
- Grounding of biomedical named entities with contextual disambiguationβ53Jun 11, 2026Updated last week
- a module to calculate the MeSH similarityβ26Apr 13, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a protein descriptor for site predictionβ16Aug 9, 2019Updated 6 years ago
- Python package for matrix storage and operations on hetnetsβ14Mar 30, 2023Updated 3 years ago
- β11Nov 16, 2019Updated 6 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text miningβ176Apr 18, 2022Updated 4 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.govβ26Jun 17, 2016Updated 10 years ago
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as iβ¦β27Sep 22, 2018Updated 7 years ago
- The source code to the book Weakly Supervised Learning (O'Reilly, 2020) by Russell Jurneyβ36Dec 7, 2020Updated 5 years ago
- This repository contains machine learning related work for the corpus to graph project, including Jupyter research notebooks and a Flask β¦β45Sep 18, 2016Updated 9 years ago
- β153Nov 30, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python text classification package with a focus on medical text.β17Jun 28, 2021Updated 4 years ago
- A convolutional neural network model for relation extraction.β12Mar 24, 2023Updated 3 years ago
- A new web-based HTML5 genome browser. Genome Maps can also browse BAM and VCFs files among other formats.β27Sep 24, 2013Updated 12 years ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.β44Mar 13, 2023Updated 3 years ago
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and heaβ¦β56Aug 26, 2018Updated 7 years ago
- Biomedical Relation Extraction for Transcription Factor and Gene / Gene Products (part of a Master Thesis at Rostlab, TUM)β12Dec 23, 2017Updated 8 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).β157Mar 12, 2023Updated 3 years ago
- A Standard Database for Drug Repositioningβ19Jul 28, 2017Updated 8 years ago
- Method for drug repurposing from knowledge graphs and literatureβ36Aug 28, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simple query expansion using Word2Vec and GloVeβ16Dec 7, 2022Updated 3 years ago
- πͺ What's the latest version for each database?β30Updated this week
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giβ¦β45Sep 7, 2022Updated 3 years ago
- Bio relation extraction labeled datasetβ45Apr 15, 2022Updated 4 years ago
- Keras implementation of graph convolutional networks for sequence labellingβ12Sep 21, 2018Updated 7 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towaβ¦β15Jul 26, 2019Updated 6 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognitionβ50Mar 29, 2022Updated 4 years ago