Tool that converts between BioC XML files and BioC JSON files
☆19Jan 10, 2017Updated 9 years ago
Alternatives and similar repositories for BioC-JSON
Users that are interested in BioC-JSON are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 8 years ago
- Python library for working with BioC files☆13Mar 28, 2018Updated 8 years ago
- Data structures and code to read/write BioC XML and Json.☆34Aug 21, 2023Updated 2 years ago
- Retrieve and process PubTator annotations☆44Aug 10, 2023Updated 2 years ago
- Biomedical Entity Linking Benchmark☆13Dec 10, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Biomedical Relation Extraction for Transcription Factor and Gene / Gene Products (part of a Master Thesis at Rostlab, TUM)☆12Dec 23, 2017Updated 8 years ago
- Python library for converting between BioNLP formats☆23Apr 20, 2023Updated 3 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Jul 26, 2019Updated 6 years ago
- ☆39Nov 16, 2020Updated 5 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆31May 6, 2023Updated 3 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Mar 15, 2018Updated 8 years ago
- An approximate nearest-neighbor search for text reuse.☆12Oct 5, 2020Updated 5 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆27Nov 30, 2023Updated 2 years ago
- Fast, permanent and flexible patterns for sharing and computing on texts with metadata using Apache Arrow.☆15Mar 1, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools for working with the S800 corpus☆12Sep 17, 2020Updated 5 years ago
- ☆24Mar 1, 2023Updated 3 years ago
- Repository used to collect biomedical corpus on the Internet!☆35Sep 24, 2020Updated 5 years ago
- AIONER☆67Jul 25, 2024Updated last year
- brainCOLOR project: brain image labeling protocol and optimal colormap designed for brain images☆18Mar 28, 2019Updated 7 years ago
- Principal component analysis plugin for D3.js☆10Aug 20, 2017Updated 8 years ago
- 16S pipeline using qiime2 created with snakemake☆12Updated this week
- This is the open source repository of my Recursive Neural Network for the BioCreative 6 track5 - chemprot task.☆11Feb 22, 2019Updated 7 years ago
- ☆12Jul 23, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Statistical analysis of dissolved organic matter based on high-resolution mass spectrometry☆18Apr 15, 2026Updated last month
- Generating graph structures from OWL ontologies☆12Nov 21, 2017Updated 8 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- ARCHIVED: this has been folded into the owlapi☆11Oct 27, 2020Updated 5 years ago
- Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images☆14Feb 4, 2019Updated 7 years ago
- ☆29Feb 23, 2026Updated 3 months ago
- This is an integration layer that sits between Whoosh and Django so that full-text searching can be not only possible within any Django p…☆22Sep 1, 2017Updated 8 years ago
- Code for RNA-seq gene coexpression analysis☆10Dec 23, 2021Updated 4 years ago
- Keras Callback to Automatically Adjust the learning rate when it stops improving☆16Jul 23, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Clinical Text Mining☆12Aug 15, 2017Updated 8 years ago
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- TwiMed: Twitter and PubMed Comparable Corpus of Drugs, Diseases, Symptoms and their Relations☆11May 24, 2017Updated 9 years ago
- ☆16Feb 8, 2019Updated 7 years ago
- Builds a knowledge graph from the [COVID-19 Open Research Dataset (CORD-19)](https://pages.semanticscholar.org/coronavirus-research) data…☆16Mar 27, 2020Updated 6 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆344Nov 9, 2021Updated 4 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 4 years ago