greenelab / pubtator
Retrieve and process PubTator annotations
β44Updated last year
Alternatives and similar repositories for pubtator:
Users that are interested in pubtator are comparing it to the libraries listed below
- β41Updated 5 years ago
- Data structures and code to read/write BioC XML and Json.β32Updated last year
- Extracting biomedical relationships from literature with Snorkel πβ58Updated 4 years ago
- a module to calculate the MeSH similarityβ26Updated 4 years ago
- β22Updated 2 years ago
- A framework for keeping biomedical text mining result up-to-dateβ42Updated 4 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giβ¦β45Updated 2 years ago
- Python library for work with BioCreative filesβ13Updated 7 years ago
- a module to calculate the MeSH similarityβ25Updated 3 years ago
- β24Updated 4 years ago
- Repository for student projects within biomedical text mining from Lund Universityβ54Updated last year
- Grounding of biomedical named entities with contextual disambiguationβ43Updated last month
- Python library for working with BioC filesβ13Updated 7 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towaβ¦β15Updated 5 years ago
- β67Updated 2 years ago
- A literature review for constructing and using knowledge graphs in a biomedical setting.β11Updated 4 years ago
- Bioformer: an efficient BERT model for biomedical text miningβ54Updated 2 years ago
- Tool that converts between BioC XML files and BioC JSON filesβ16Updated 8 years ago
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as iβ¦β26Updated 6 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)β19Updated last year
- Literature mining for T cell relationsβ23Updated 2 years ago
- A Standard Database for Drug Repositioningβ19Updated 7 years ago
- Turning Ontologies Plus Annotation Properties into Vectorsβ35Updated 4 years ago
- CoCoScore: context-aware co-occurrence scores for text mining applicationsβ18Updated 6 years ago
- β53Updated 5 years ago
- SNP Extraction Tool for Human Variationsβ27Updated last year
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!β14Updated 10 months ago
- Public release of the DeepPhe analytic softwareβ30Updated 2 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work β¦β102Updated 4 years ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseasesβ48Updated 5 months ago