Retrieve and process PubTator annotations
☆44Aug 10, 2023Updated 2 years ago
Alternatives and similar repositories for pubtator
Users that are interested in pubtator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- Tool that converts between BioC XML files and BioC JSON files☆19Jan 10, 2017Updated 9 years ago
- Computing term cooccurrence in MEDLINE☆18Apr 13, 2021Updated 5 years ago
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 8 years ago
- NERO-nlp is a PyPI package for biomedical Named Entity (Recognition) Ontology☆12Oct 1, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆38Jul 25, 2023Updated 2 years ago
- ☆13Jan 29, 2021Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 9 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆345Nov 9, 2021Updated 4 years ago
- A short tutorial to map biomedical free-text into UMLS concepts using MetaMap☆31Sep 7, 2023Updated 2 years ago
- Extremely fast Variant Call Format annotation☆11Dec 25, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A beginner's guide to using Named-Entity Recognition for data extraction from biomedical literature☆24Apr 9, 2021Updated 5 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 7 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- Model to predict kinase-ligand pKi values.☆12Jul 6, 2023Updated 2 years ago
- User-friendly extensions to MeSH☆11Feb 4, 2016Updated 10 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Analysis code for knowledge discovery project☆12Sep 25, 2018Updated 7 years ago
- Issue tracker for the Open Targets Platform☆13Jul 8, 2025Updated 11 months ago
- Library for biomedical knowledge manipulation☆24May 27, 2014Updated 12 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Processing SIDER 4.1: the side effect resource☆23Feb 3, 2016Updated 10 years ago
- System for Medical Concept Extraction and Linking☆446Aug 12, 2024Updated last year
- a module to calculate the MeSH similarity☆26Apr 13, 2021Updated 5 years ago
- Utility functions for traversing the Medical Subject Heading (MeSH) ontology tree☆44Apr 17, 2019Updated 7 years ago
- ☆13Jun 8, 2026Updated 3 weeks ago
- Graph-based modeling environment for biology, including prototype editor and services☆43Jun 17, 2026Updated 2 weeks ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jun 13, 2026Updated 3 weeks ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Sep 1, 2020Updated 5 years ago
- Gene Exploration System for Variance☆22Dec 8, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Named Entity Recognition for biomedical entities☆48Jan 11, 2023Updated 3 years ago
- ☆27Mar 2, 2026Updated 4 months ago
- ☆15Nov 22, 2022Updated 3 years ago
- Example R scripts to run burden and association analysis on array CNV data☆14Nov 9, 2016Updated 9 years ago
- Website to analyze conflicting assertions in ClinVar☆19Mar 16, 2026Updated 3 months ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- R package for WikiPathways API☆20Nov 3, 2025Updated 8 months ago