Retrieve and process PubTator annotations
β44Aug 10, 2023Updated 2 years ago
Alternatives and similar repositories for pubtator
Users that are interested in pubtator are comparing it to the libraries listed below
Sorting:
- Computing term cooccurrence in MEDLINEβ18Apr 13, 2021Updated 4 years ago
- Extracting biomedical relationships from literature with Snorkel πβ58Feb 1, 2021Updated 5 years ago
- Visualize the proportion of results for a given PubMed search over time and compare searches to one another!β16Feb 17, 2023Updated 3 years ago
- Tool that converts between BioC XML files and BioC JSON filesβ18Jan 10, 2017Updated 9 years ago
- Python library for work with BioCreative filesβ13Mar 28, 2018Updated 7 years ago
- using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)β10Jan 13, 2023Updated 3 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Predictionβ114Feb 10, 2023Updated 3 years ago
- Interactive table from gemini outputβ10Mar 5, 2019Updated 7 years ago
- Javascript based component for highlighting text-mined annotations of different semantic types in a full text article identified by a PMCβ¦β11Nov 29, 2016Updated 9 years ago
- Web application for clinical pharmacogenomic interpretationβ10Mar 3, 2017Updated 9 years ago
- User-friendly extensions to MeSHβ11Feb 4, 2016Updated 10 years ago
- NERO-nlp is a PyPI package for biomedical Named Entity (Recognition) Ontologyβ12Oct 1, 2020Updated 5 years ago
- β11Aug 6, 2019Updated 6 years ago
- semi-reference-based short read compressionβ11Mar 5, 2019Updated 7 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequencesβ14Sep 2, 2016Updated 9 years ago
- β13Jan 29, 2021Updated 5 years ago
- Search public databases for given genotypic informationβ11Mar 21, 2018Updated 7 years ago
- Library for biomedical knowledge manipulationβ24May 27, 2014Updated 11 years ago
- Extremely fast Variant Call Format annotationβ11Dec 25, 2024Updated last year
- De novo genome assembler.β11Jul 30, 2018Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.β22Mar 25, 2022Updated 3 years ago
- a module to calculate the MeSH similarityβ26Apr 13, 2021Updated 4 years ago
- Model to predict kinase-ligand pKi values.β12Jul 6, 2023Updated 2 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projectsβ13Apr 23, 2019Updated 6 years ago
- ICMR Sponsored Seminar On Deep Learning Techniques and Tools for Medical Applicationsβ14Jul 30, 2020Updated 5 years ago
- Human Postmortem ASD RNA-seq Analysis Parikshak et al 2016β15Sep 28, 2021Updated 4 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.β342Nov 9, 2021Updated 4 years ago
- A text mining tool for developing visual and interactive relationship networks from PubMed article information.β16Aug 1, 2024Updated last year
- Analysis of various health-related datasetsβ13Mar 18, 2021Updated 4 years ago
- gnomAD browser pre-ASHG 2018β33Nov 2, 2020Updated 5 years ago
- Example R scripts to run burden and association analysis on array CNV dataβ14Nov 9, 2016Updated 9 years ago
- Classify web visitor queries so you can chart, and respond to, trends in information seekingβ14Sep 7, 2023Updated 2 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)β15Jul 21, 2017Updated 8 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene listβ37Jul 25, 2023Updated 2 years ago
- a module to calculate the MeSH similarityβ27Dec 2, 2021Updated 4 years ago
- A fast and programmatic MELODIβ17Apr 16, 2024Updated last year
- ππ¬ Orange add-on for gene expression of single cell dataβ17Updated this week
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towaβ¦β15Jul 26, 2019Updated 6 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores β¦β16Aug 9, 2018Updated 7 years ago