Retrieve and process PubTator annotations
☆45Aug 10, 2023Updated 3 years ago
Alternatives and similar repositories for pubtator
Users that are interested in pubtator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- Tool that converts between BioC XML files and BioC JSON files☆19Jan 10, 2017Updated 9 years ago
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 8 years ago
- Computing term cooccurrence in MEDLINE☆18Apr 13, 2021Updated 5 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆39Jul 25, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- ☆28Sep 18, 2026Updated last month
- ☆13Oct 26, 2018Updated 8 years ago
- ☆13Jan 29, 2021Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- A short tutorial to map biomedical free-text into UMLS concepts using MetaMap☆31Sep 7, 2023Updated 3 years ago
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 9 years ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Aug 16, 2018Updated 8 years ago
- Model to predict kinase-ligand pKi values.☆12Jul 6, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- Example R scripts to run burden and association analysis on array CNV data☆14Nov 9, 2016Updated 9 years ago
- Analysis code for knowledge discovery project☆12Sep 25, 2018Updated 8 years ago
- A simple REST-server around ctakes clinical pipeline.☆30Feb 10, 2017Updated 9 years ago
- User-friendly extensions to MeSH☆12Feb 4, 2016Updated 10 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 8 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- ☆23Mar 30, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Issue tracker for the Open Targets Platform☆13Jul 8, 2025Updated last year
- ☆13Sep 16, 2026Updated last month
- HGVS variant nomenclature checker☆99May 1, 2023Updated 3 years ago
- A beginner's guide to using Named-Entity Recognition for data extraction from biomedical literature☆24Apr 9, 2021Updated 5 years ago
- ☆18Jun 3, 2020Updated 6 years ago
- Phenotype driven gene prioritization for HPO☆53Jul 26, 2021Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Oct 23, 2026Updated 2 weeks ago
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆21Feb 27, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Apr 3, 2023Updated 3 years ago
- ☆71Sep 3, 2026Updated 2 months ago
- a module to calculate the MeSH similarity☆27Dec 2, 2021Updated 4 years ago
- Named Entity Recognition for biomedical entities☆48Jan 11, 2023Updated 3 years ago
- Processing SIDER 4.1: the side effect resource☆23Feb 3, 2016Updated 10 years ago
- Scripts written to demo R for Biochemists☆10Jan 12, 2026Updated 9 months ago
- gnomAD browser pre-ASHG 2018☆32Nov 2, 2020Updated 6 years ago