greenelab / pubtatorLinks
Retrieve and process PubTator annotations
β44Updated last year
Alternatives and similar repositories for pubtator
Users that are interested in pubtator are comparing it to the libraries listed below
Sorting:
- Extracting biomedical relationships from literature with Snorkel πβ58Updated 4 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giβ¦β45Updated 2 years ago
- β41Updated 5 years ago
- a module to calculate the MeSH similarityβ26Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.β33Updated last year
- Python library for working with BioC filesβ13Updated 7 years ago
- A framework for keeping biomedical text mining result up-to-dateβ42Updated 5 years ago
- Grounding of biomedical named entities with contextual disambiguationβ45Updated 2 weeks ago
- β24Updated 4 years ago
- β68Updated 3 years ago
- β22Updated 2 years ago
- Hetnets in Python (relocated from dhimmel/hetio)β97Updated 2 years ago
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as iβ¦β26Updated 6 years ago
- Tool that converts between BioC XML files and BioC JSON filesβ17Updated 8 years ago
- Literature mining for T cell relationsβ23Updated 3 years ago
- a module to calculate the MeSH similarityβ25Updated 3 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work β¦β102Updated 5 years ago
- Python library for work with BioCreative filesβ13Updated 7 years ago
- Repository for student projects within biomedical text mining from Lund Universityβ55Updated 2 years ago
- Biomedical wordlists (of drugs, genes, etc) for several text mining projectsβ18Updated 2 years ago
- Public release of the DeepPhe analytic softwareβ30Updated this week
- OBO-formatted ontologies β networkx (Python 3)β141Updated 4 months ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.govβ27Updated 9 years ago
- Turning Ontologies Plus Annotation Properties into Vectorsβ35Updated 4 years ago
- Phenotype comparison tools using semantic similarity.β65Updated last year
- Text annotation tool for team collaborationβ41Updated last year
- Open Targets Library ETL Pipeline | Apache Beamβ16Updated 4 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towaβ¦β15Updated 6 years ago
- K-RET: Knowledgeable Biomedical Relation Extraction Systemβ10Updated 5 months ago
- Github repo for the Experimental Factor Ontology (EFO)β58Updated this week