Alternatives and similar repositories for OGER

Users that are interested in OGER are comparing it to the libraries listed below

• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆57Updated last week
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆46Updated this week
• larsjuhljensen / tagger
  ☆24Updated 2 years ago
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆74Updated 3 weeks ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆62Updated 2 weeks ago
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆138Updated last week
• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆20Updated 3 weeks ago
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆82Updated last month
• biolink / ontobio
  python library for working with ontologies and ontology associations
  ☆133Updated 11 months ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago
• biolink / biolink-model-toolkit
  A collection of useful python functions for looking up information and working with the Biolink Model
  ☆24Updated 3 weeks ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆33Updated 2 years ago
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆16Updated 6 months ago
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆42Updated this week
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆28Updated last week
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆197Updated last year
• monarch-initiative / phenomics-assistant
  LLM retrieval augmented generation agent for the Monarch Knowledge graph.
  ☆26Updated 3 months ago
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated 6 months ago
• OBOFoundry / COB
  An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)
  ☆45Updated 3 weeks ago
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆150Updated 9 months ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 5 years ago
• DiseaseOntology / SymptomOntology
  The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…
  ☆44Updated last year
• mapping-commons / mh_mapping_initiative
  Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.
  ☆13Updated 5 months ago
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated 9 months ago
• obi-ontology / obi
  The Ontology for Biomedical Investigations
  ☆98Updated this week
• related-sciences / nxontology
  NetworkX-based Python library for representing ontologies
  ☆93Updated 2 years ago
• biolink / kgx
  KGX is a Python library for exchanging Knowledge Graphs
  ☆136Updated 3 weeks ago
• monarch-initiative / MAxO
  Medical action ontology
  ☆61Updated 4 months ago
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 7 years ago