OntoGene / OGERLinks
โ24Updated 4 years ago
Alternatives and similar repositories for OGER
Users that are interested in OGER are comparing it to the libraries listed below
Sorting:
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ55Updated this week
- โ22Updated 2 years ago
- A framework for keeping biomedical text mining result up-to-dateโ42Updated 4 years ago
- Grounding of biomedical named entities with contextual disambiguationโ44Updated last month
- Data structures and code to read/write BioC XML and Json.โ33Updated last year
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Updated last year
- Map your disease and phenotype terms to the Open Targets platform ontologyโ21Updated this week
- Ontology cross-reference and mapping serviceโ19Updated last month
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)โ21Updated 3 years ago
- a module to calculate the MeSH similarityโ26Updated 4 years ago
- Draft cell type definitions from data - candidates for inclusion in CLโ12Updated 5 months ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.โ79Updated 3 weeks ago
- A full-text article retrieval pipeline for biomedical literature.โ21Updated 3 months ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.โ16Updated last month
- ๐ช What's the latest version for each database?โ27Updated this week
- A stitching platform for InXightโ15Updated 2 months ago
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ69Updated last week
- Python library for working with BioC filesโ13Updated 7 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.โ24Updated 10 months ago
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.โ24Updated last week
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.โ13Updated last week
- PhenoTaggerโ57Updated last year
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ35Updated this week
- Python library for work with BioCreative filesโ13Updated 7 years ago
- Github repo for the Experimental Factor Ontology (EFO)โ58Updated last week
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ131Updated this week
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!โ14Updated last year
- โ23Updated 7 months ago
- a module to calculate the MeSH similarityโ25Updated 3 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)โ19Updated 11 months ago