OntoGene / OGER
β24Updated 4 years ago
Alternatives and similar repositories for OGER:
Users that are interested in OGER are comparing it to the libraries listed below
- πΊοΈ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaβ¦β51Updated last week
- β22Updated last year
- Grounding of biomedical named entities with contextual disambiguationβ41Updated 3 months ago
- Ontology cross-reference and mapping serviceβ18Updated 7 months ago
- Data structures and code to read/write BioC XML and Json.β31Updated last year
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.β78Updated last month
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubβ32Updated 11 months ago
- Draft cell type definitions from data - candidates for inclusion in CLβ12Updated last month
- PhenoTaggerβ55Updated last year
- π A Python package for using ontologies, terminologies, and biomedical nomenclaturesβ62Updated this week
- A framework for keeping biomedical text mining result up-to-dateβ41Updated 4 years ago
- β20Updated 3 months ago
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.β13Updated last month
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cβ¦β50Updated 7 months ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)β21Updated 3 years ago
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.β21Updated last month
- Github repo for the Experimental Factor Ontology (EFO)β58Updated this week
- πͺ What's the latest version for each database?β27Updated this week
- phenol: Phenotype ontology libraryβ23Updated 7 months ago
- Python library for working with BioC filesβ13Updated 6 years ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)β33Updated last week
- Communitiy-based Cell Line Ontologyβ18Updated 7 months ago
- A stitching platform for InXightβ16Updated 3 months ago
- Retrieve and process PubTator annotationsβ44Updated last year
- Python library for work with BioCreative filesβ13Updated 6 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.β23Updated 6 months ago
- Map your disease and phenotype terms to the Open Targets platform ontologyβ21Updated 3 months ago
- Integrated OBO ontology storeβ44Updated 3 months ago
- First pass at a thin wrapper around the Monarch API and ChatGPT pluginβ13Updated 3 months ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposingβ32Updated 7 years ago