Alternatives and similar repositories for OGER

Users that are interested in OGER are comparing it to the libraries listed below

• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆57Updated 2 weeks ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆45Updated last month
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆135Updated this week
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆74Updated this week
• larsjuhljensen / tagger
  ☆22Updated 2 years ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆60Updated last week
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆80Updated 3 weeks ago
• biolink / biolink-model-toolkit
  A collection of useful python functions for looking up information and working with the Biolink Model
  ☆24Updated last week
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated 2 years ago
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• biolink / ontobio
  python library for working with ontologies and ontology associations
  ☆128Updated 7 months ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated this week
• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆19Updated 4 months ago
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated 2 months ago
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆38Updated last week
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆194Updated last year
• evidenceontology / evidenceontology
  Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to c…
  ☆50Updated 2 months ago
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 2 years ago
• mapping-commons / mh_mapping_initiative
  Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.
  ☆13Updated last month
• monarch-initiative / phenol
  phenol: Phenotype ontology library
  ☆24Updated this week
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 5 years ago
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆16Updated 2 months ago
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆66Updated 3 years ago
• ncbi-nlp / PhenoTagger
  PhenoTagger
  ☆58Updated last year
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆146Updated 5 months ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 7 years ago
• biolink / kgx
  KGX is a Python library for exchanging Knowledge Graphs
  ☆131Updated last week
• SmartDataAnalytics / BioKEEN
  A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…
  ☆45Updated 3 years ago