OntoGene / OGERLinks
โ24Updated 5 years ago
Alternatives and similar repositories for OGER
Users that are interested in OGER are comparing it to the libraries listed below
Sorting:
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ57Updated this week
- โ24Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguationโ45Updated 3 weeks ago
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ138Updated this week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Updated last year
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.โ82Updated 3 weeks ago
- Github repo for the Experimental Factor Ontology (EFO)โ62Updated last week
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ74Updated this week
- Ontology cross-reference and mapping serviceโ20Updated last week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ42Updated this week
- Draft cell type definitions from data - candidates for inclusion in CLโ12Updated 5 months ago
- A collection of useful python functions for looking up information and working with the Biolink Modelโ24Updated last week
- python library for working with ontologies and ontology associationsโ133Updated 10 months ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.โ16Updated 5 months ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Modelsโ197Updated last year
- Retrieve and process PubTator annotationsโ44Updated 2 years ago
- ๐ช What's the latest version for each database?โ28Updated this week
- Data structures and code to read/write BioC XML and Json.โ33Updated 2 years ago
- Data Ingestion Pipeline for Monarchโ57Updated 3 years ago
- PhenoTaggerโ64Updated last year
- Map your disease and phenotype terms to the Open Targets platform ontologyโ22Updated last month
- A framework for keeping biomedical text mining result up-to-dateโ42Updated 5 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: โA perceived change in function, sensation or appearanceโฆโ44Updated last year
- ๐ก Unified access to OLS instances like from the EBI and TIBโ13Updated this week
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposingโ33Updated 8 years ago
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ45Updated last week
- OBO-formatted ontologies โ networkx (Python 3)โ150Updated 8 months ago
- API for linked biological knowledgeโ66Updated 3 years ago
- NetworkX-based Python library for representing ontologiesโ92Updated 2 years ago
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.โ12Updated last week