ncbi / BioConceptVec
☆40Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for BioConceptVec
- Retrieve and process PubTator annotations☆43Updated last year
- Extracting biomedical relationships from literature with Snorkel 🏊☆59Updated 3 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- A framework for keeping biomedical text mining result up-to-date☆41Updated 4 years ago
- Python library for working with BioC files☆13Updated 6 years ago
- Literature mining for T cell relations☆23Updated 2 years ago
- ☆21Updated last year
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…☆24Updated 6 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆46Updated 2 years ago
- a module to calculate the MeSH similarity☆24Updated 2 years ago
- Repository for student projects within biomedical text mining from Lund University☆51Updated last year
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 7 years ago
- CoCoScore: context-aware co-occurrence scores for text mining applications☆18Updated 5 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆13Updated 5 months ago
- Python library for work with BioCreative files☆12Updated 6 years ago
- ☆51Updated 4 years ago
- SNP Extraction Tool for Human Variations☆27Updated 9 months ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated 4 months ago
- A Standard Database for Drug Repositioning☆17Updated 7 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- ☆23Updated 3 years ago
- Text mining for pharmacogenomic associations for PharmGKB☆26Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguation☆39Updated 3 weeks ago
- ☆70Updated 11 months ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆27Updated 3 years ago
- Target prioritization using network representation learning☆11Updated 2 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago