ncbi / BioConceptVec
☆41Updated 5 years ago
Alternatives and similar repositories for BioConceptVec:
Users that are interested in BioConceptVec are comparing it to the libraries listed below
- Retrieve and process PubTator annotations☆44Updated last year
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆32Updated last year
- Python library for working with BioC files☆13Updated 7 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 4 years ago
- Literature mining for T cell relations☆23Updated 2 years ago
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…☆26Updated 6 years ago
- a module to calculate the MeSH similarity☆24Updated 3 years ago
- CoCoScore: context-aware co-occurrence scores for text mining applications☆18Updated 6 years ago
- Repository for student projects within biomedical text mining from Lund University☆53Updated last year
- ☆22Updated 2 years ago
- SNP Extraction Tool for Human Variations☆27Updated last year
- Python library for work with BioCreative files☆13Updated 7 years ago
- ☆24Updated 4 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 8 years ago
- ☆53Updated 5 years ago
- Grounding of biomedical named entities with contextual disambiguation☆43Updated 3 weeks ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆14Updated 10 months ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- Text mining for pharmacogenomic associations for PharmGKB☆26Updated 2 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆54Updated 2 years ago
- A Standard Database for Drug Repositioning☆19Updated 7 years ago
- ☆65Updated last year
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- Disease pathways in the human interactome☆23Updated 7 years ago
- ☆67Updated 2 years ago
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆41Updated 2 years ago