ncbi / BioConceptVec
☆40Updated 4 years ago
Alternatives and similar repositories for BioConceptVec:
Users that are interested in BioConceptVec are comparing it to the libraries listed below
- Retrieve and process PubTator annotations☆44Updated last year
- Python library for working with BioC files☆13Updated 6 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- A framework for keeping biomedical text mining result up-to-date☆41Updated 4 years ago
- Literature mining for T cell relations☆23Updated 2 years ago
- a module to calculate the MeSH similarity☆24Updated 3 years ago
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 8 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- ☆22Updated last year
- Python library for work with BioCreative files☆13Updated 6 years ago
- Repository for student projects within biomedical text mining from Lund University☆51Updated last year
- ☆52Updated 4 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆14Updated 8 months ago
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…☆25Updated 6 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆27Updated 8 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated 7 months ago
- A Standard Database for Drug Repositioning☆18Updated 7 years ago
- Grounding of biomedical named entities with contextual disambiguation☆41Updated 3 months ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆32Updated 7 years ago
- Phenotype comparison tools using semantic similarity.☆63Updated 9 months ago
- CoCoScore: context-aware co-occurrence scores for text mining applications☆18Updated 5 years ago
- SNP Extraction Tool for Human Variations☆27Updated last year
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆45Updated 2 months ago
- ☆71Updated last year
- A project to capture biological pathway data from academic papers☆29Updated 2 weeks ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago