gyorilab / indraLinks
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
☆201Updated last week
Alternatives and similar repositories for indra
Users that are interested in indra are comparing it to the libraries listed below
Sorting:
- A Python frontend to (Open Biomedical) Ontologies.☆248Updated 3 weeks ago
- NetworkX-based Python library for representing ontologies☆90Updated 2 years ago
- python library for working with ontologies and ontology associations☆132Updated 9 months ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆196Updated last year
- OBO-formatted ontologies → networkx (Python 3)☆150Updated 8 months ago
- Hetnets in Python (relocated from dhimmel/hetio)☆99Updated 3 months ago
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆17Updated this week
- TypeDB Bio: Biomedical Knowledge Graph☆87Updated 6 months ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆42Updated this week
- Grounding of biomedical named entities with contextual disambiguation☆45Updated this week
- KGX is a Python library for exchanging Knowledge Graphs☆136Updated 2 months ago
- Feature learning over RDF data and OWL ontologies☆46Updated 3 years ago
- BioGrakn Knowledge Graph☆185Updated 4 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆73Updated last week
- Schema and generated objects for biolink data model and upper ontology☆216Updated this week
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- ☆70Updated 3 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.☆82Updated 2 years ago
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆137Updated last week
- ☆23Updated 2 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆57Updated this week
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆44Updated last year
- Hetionet: an integrative network of disease☆321Updated 2 years ago
- Python library for working with BioC files☆13Updated 7 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- ☆24Updated 5 years ago
- ☆131Updated 2 years ago
- Github repo for the Experimental Factor Ontology (EFO)☆62Updated last week