Alternatives and similar repositories for TeamTat

Users that are interested in TeamTat are comparing it to the libraries listed below

• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆27Updated 4 years ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆45Updated this week
• LHNCBC / SemRep
  ☆70Updated 3 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆33Updated 2 years ago
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆57Updated 9 months ago
• AstraZeneca / KAZU
  Fast, world class biomedical NER
  ☆87Updated 9 months ago
• jakelever / kindred
  A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
  ☆157Updated 2 years ago
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• dmis-lab / bern
  A neural named entity recognition and multi-type normalization tool for biomedical text mining
  ☆177Updated 3 years ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆62Updated 4 months ago
• dterg / biomedical_corpora
  Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…
  ☆18Updated 7 years ago
• dmis-lab / BERN2
  BERN2: an advanced neural biomedical namedentity recognition and normalization tool
  ☆201Updated last year
• greenelab / snorkeling
  Extracting biomedical relationships from literature with Snorkel 🏊
  ☆58Updated 4 years ago
• chanzuckerberg / MedMentions
  A corpus of Biomedical papers annotated with mentions of UMLS entities.
  ☆341Updated 4 years ago
• UCDenver-ccp / CRAFT
  ☆76Updated last year
• OntoGene / OGER
  ☆24Updated 5 years ago
• related-sciences / nxontology
  NetworkX-based Python library for representing ontologies
  ☆90Updated 2 years ago
• chanzuckerberg / ChemDisGene
  Bio relation extraction labeled dataset
  ☆45Updated 3 years ago
• DiseaseOntology / SymptomOntology
  The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…
  ☆44Updated last year
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆41Updated last year
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago
• BaderLab / saber
  Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …
  ☆102Updated 5 years ago
• ncbi-nlp / ezTag
  Web interface that allows users to perform computer-assisted text annotation
  ☆15Updated 2 years ago
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆196Updated last year
• larsjuhljensen / tagger
  ☆23Updated 2 years ago
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 5 years ago
• ncbi-nlp / BioC-JSON
  Tool that converts between BioC XML files and BioC JSON files
  ☆18Updated 8 years ago
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆57Updated 2 years ago
• Tian312 / PICO_Parser
  A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
  ☆46Updated 5 years ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆55Updated 2 years ago