Alternatives and similar repositories for tagger

Users that are interested in tagger are comparing it to the libraries listed below

• OntoGene / OGER
  ☆24Updated 4 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated last year
• adam-sam-brown / repoDB
  A Standard Database for Drug Repositioning
  ☆19Updated 8 years ago
• Orphanet / Orphadata_aggregated
  Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases
  ☆50Updated 3 weeks ago
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆56Updated last week
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆58Updated this week
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 7 years ago
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆141Updated 4 months ago
• biomedicalinformaticsgroup / cadmus
  A full-text article retrieval pipeline for biomedical literature.
  ☆21Updated 4 months ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 5 years ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated this week
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆71Updated 2 weeks ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 7 years ago
• AnacletoLAB / RNA-KG
  Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…
  ☆23Updated this week
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆45Updated last week
• SuLab / DrugMechDB
  A database of paths that represent the mechanism of action from a drug to a disease in an indication.
  ☆65Updated 2 months ago
• billgreenwald / Pubmed-Batch-Download
  Batch download articles based on PMID (Pubmed ID)
  ☆127Updated last year
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆133Updated this week
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• KerstenDoering / PubMedPortable
  PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…
  ☆26Updated 6 years ago
• tatonetti-lab / onsides
  A resource of adverse drug effects extracted from FDA structured product labels
  ☆81Updated last month
• SmartDataAnalytics / BioKEEN
  A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…
  ☆45Updated 2 years ago
• ncbi / BioConceptVec
  ☆41Updated 5 years ago
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆192Updated last year
• greenelab / snorkeling
  Extracting biomedical relationships from literature with Snorkel 🏊
  ☆58Updated 4 years ago
• jakelever / pgxmine
  Text mining for pharmacogenomic associations for PharmGKB
  ☆26Updated 2 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆33Updated last year
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆79Updated 2 months ago
• ncbi-nlp / TeamTat
  Text annotation tool for team collaboration
  ☆41Updated last year
• dhimmel / clintrials
  Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov
  ☆27Updated 9 years ago