OntoGene / PyBioCLinks
Python library for working with BioC files
☆13Updated 7 years ago
Alternatives and similar repositories for PyBioC
Users that are interested in PyBioC are comparing it to the libraries listed below
Sorting:
- Data structures and code to read/write BioC XML and Json.☆32Updated 2 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- Tool that converts between BioC XML files and BioC JSON files☆17Updated 8 years ago
- ☆69Updated 3 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Grounding of biomedical named entities with contextual disambiguation☆45Updated last month
- a module to calculate the MeSH similarity☆26Updated 3 years ago
- PhenoTagger☆58Updated last year
- Python library for work with BioCreative files☆13Updated 7 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- ☆22Updated 2 years ago
- ☆24Updated 4 years ago
- AIONER☆59Updated last year
- A full-text article retrieval pipeline for biomedical literature.☆21Updated this week
- ☆41Updated 5 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 5 years ago
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- Public release of the DeepPhe analytic software☆30Updated last week
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆194Updated last year
- ☆28Updated 2 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- Repository for student projects within biomedical text mining from Lund University☆55Updated 2 years ago
- A Silver Standard Corpus of Human Phenotype-Gene Relations☆13Updated 2 years ago
- Github repo for the Experimental Factor Ontology (EFO)☆58Updated this week
- Identification of Human Phenotype Entities☆11Updated 6 years ago
- OBO-formatted ontologies → networkx (Python 3)☆142Updated 5 months ago
- Biomedical Entity Linking Benchmark☆13Updated 8 months ago
- ☆73Updated last year
- Text annotation tool for team collaboration☆42Updated last year