OntoGene / PyBioCLinks
Python library for working with BioC files
☆13Updated 7 years ago
Alternatives and similar repositories for PyBioC
Users that are interested in PyBioC are comparing it to the libraries listed below
Sorting:
- Tool that converts between BioC XML files and BioC JSON files☆18Updated 8 years ago
- Data structures and code to read/write BioC XML and Json.☆32Updated 2 years ago
- ☆22Updated 2 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- ☆24Updated 4 years ago
- ☆69Updated 3 years ago
- a module to calculate the MeSH similarity☆26Updated 3 years ago
- AIONER☆60Updated last year
- ☆41Updated 5 years ago
- Grounding of biomedical named entities with contextual disambiguation☆45Updated last month
- A framework for keeping biomedical text mining result up-to-date☆42Updated 5 years ago
- Text annotation tool for team collaboration☆42Updated last year
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- ☆28Updated 2 years ago
- PhenoTagger☆58Updated last year
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- Public release of the DeepPhe analytic software☆30Updated 3 weeks ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆51Updated 2 months ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- A full-text article retrieval pipeline for biomedical literature.☆21Updated 3 weeks ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- OBO-formatted ontologies → networkx (Python 3)☆146Updated 5 months ago
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…☆26Updated 6 years ago
- Python library for work with BioCreative files☆13Updated 7 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆195Updated last year
- Github repo for the Experimental Factor Ontology (EFO)☆60Updated 2 weeks ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆194Updated last year
- Biomedical Entity Linking Benchmark☆14Updated 9 months ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆42Updated last year