OntoGene / PyBioC
Python library for working with BioC files
☆13Updated 6 years ago
Alternatives and similar repositories for PyBioC:
Users that are interested in PyBioC are comparing it to the libraries listed below
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 8 years ago
- Retrieve and process PubTator annotations☆44Updated last year
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- a module to calculate the MeSH similarity☆26Updated 3 years ago
- ☆24Updated 4 years ago
- Python library for work with BioCreative files☆13Updated 6 years ago
- Grounding of biomedical named entities with contextual disambiguation☆43Updated 4 months ago
- ☆41Updated 5 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- A Silver Standard Corpus of Human Phenotype-Gene Relations☆13Updated 2 years ago
- ☆65Updated 2 years ago
- ☆22Updated 2 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 4 years ago
- Biomedical Entity Linking Benchmark☆11Updated 3 months ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆14Updated 9 months ago
- Bio relation extraction labeled dataset☆44Updated 2 years ago
- Ontology cross-reference and mapping service☆18Updated 8 months ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- AIONER☆52Updated 7 months ago
- a customzable pipeline for information extraction☆15Updated 2 weeks ago
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆16Updated last week
- 🪝 What's the latest version for each database?☆27Updated this week
- ☆33Updated last month
- Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆40Updated this week
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.☆14Updated 2 years ago
- UMLS Graph database for semantic queries☆20Updated 2 years ago