OntoGene / PyBioCLinks
Python library for working with BioC files
☆13Updated 7 years ago
Alternatives and similar repositories for PyBioC
Users that are interested in PyBioC are comparing it to the libraries listed below
Sorting:
- Data structures and code to read/write BioC XML and Json.☆33Updated 2 years ago
- Tool that converts between BioC XML files and BioC JSON files☆18Updated 8 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- ☆24Updated 5 years ago
- a module to calculate the MeSH similarity☆27Updated 4 years ago
- ☆70Updated 3 years ago
- ☆23Updated 2 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguation☆45Updated this week
- Python library for work with BioCreative files☆13Updated 7 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 5 years ago
- PhenoTagger☆64Updated last year
- AIONER☆62Updated last year
- ☆42Updated 5 years ago
- ☆31Updated 2 years ago
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Github repo for the Experimental Factor Ontology (EFO)☆62Updated last week
- Public release of the DeepPhe analytic software☆30Updated last week
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆44Updated last year
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆57Updated last week
- ☆76Updated last year
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆52Updated 4 months ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆82Updated last week
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆196Updated last year
- OBO-formatted ontologies → networkx (Python 3)☆150Updated 8 months ago
- ☆27Updated 2 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- Repository for student projects within biomedical text mining from Lund University☆57Updated 2 years ago
- A full-text article retrieval pipeline for biomedical literature.☆21Updated 2 weeks ago