OntoGene / PyBioCLinks
Python library for working with BioC files
☆13Updated 7 years ago
Alternatives and similar repositories for PyBioC
Users that are interested in PyBioC are comparing it to the libraries listed below
Sorting:
- Data structures and code to read/write BioC XML and Json.☆32Updated last year
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 8 years ago
- ☆41Updated 5 years ago
- Retrieve and process PubTator annotations☆44Updated last year
- ☆24Updated 4 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Grounding of biomedical named entities with contextual disambiguation☆44Updated 3 weeks ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Python library for work with BioCreative files☆13Updated 7 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 4 years ago
- A Silver Standard Corpus of Human Phenotype-Gene Relations☆13Updated 2 years ago
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- ☆22Updated 2 years ago
- AIONER☆55Updated 10 months ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated 10 months ago
- ☆67Updated 3 years ago
- Ontology cross-reference and mapping service☆19Updated last month
- ☆25Updated last year
- CoCoScore: context-aware co-occurrence scores for text mining applications☆19Updated 6 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- ☆35Updated 2 weeks ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- Map your disease and phenotype terms to the Open Targets platform ontology☆21Updated 6 months ago
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…☆26Updated 6 years ago
- Text annotation tool for team collaboration☆41Updated last year
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆17Updated last week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆35Updated this week