Alternatives and similar repositories for PyBioC

Users that are interested in PyBioC are comparing it to the libraries listed below

• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆33Updated 2 years ago
• ncbi-nlp / BioC-JSON
  Tool that converts between BioC XML files and BioC JSON files
  ☆18Updated 9 years ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆47Updated 3 weeks ago
• LHNCBC / SemRep
  ☆70Updated 3 years ago
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• ncbi / AIONER
  AIONER
  ☆62Updated last year
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆27Updated 4 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago
• OntoGene / OGER
  ☆24Updated 5 years ago
• ncbi / BioConceptVec
  ☆43Updated 5 years ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 5 years ago
• larsjuhljensen / tagger
  ☆24Updated 2 years ago
• chanzuckerberg / ChemDisGene
  Bio relation extraction labeled dataset
  ☆45Updated 3 years ago
• SmartDataAnalytics / BioKEEN
  A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…
  ☆45Updated 3 years ago
• 2mh / PyBioC
  Python library for work with BioCreative files
  ☆13Updated 7 years ago
• greenelab / snorkeling
  Extracting biomedical relationships from literature with Snorkel 🏊
  ☆58Updated 5 years ago
• ncbi-nlp / TeamTat
  Text annotation tool for team collaboration
  ☆43Updated 2 years ago
• ncbi-nlp / PhenoTagger
  PhenoTagger
  ☆64Updated 2 years ago
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆58Updated this week
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆57Updated 2 years ago
• bio-ontology-research-group / opa2vec
  Turning Ontologies Plus Annotation Properties into Vectors
  ☆35Updated 5 years ago
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆150Updated 10 months ago
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆200Updated last year
• ncbi / BioREx
  ☆41Updated 8 months ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆62Updated last week
• DiseaseOntology / SymptomOntology
  The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…
  ☆44Updated last year
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated 2 months ago
• ncbi-nlp / pubtator-gpt
  ☆32Updated 2 years ago
• ncbi / BioRED
  ☆29Updated 2 years ago
• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆20Updated last month