LHNCBC / SemRepLinks
☆67Updated 3 years ago
Alternatives and similar repositories for SemRep
Users that are interested in SemRep are comparing it to the libraries listed below
Sorting:
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- A Serverless Text Annotation Tool for Corpus Development☆56Updated 3 months ago
- Data structures and code to read/write BioC XML and Json.☆32Updated last year
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguation☆44Updated 3 weeks ago
- A near real-time named-entity recognizer☆60Updated last year
- Retrieve and process PubTator annotations☆44Updated last year
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆41Updated last month
- Biomedical Entity Linking Benchmark☆13Updated 5 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Medical Relations and Entities Extraction☆36Updated 2 years ago
- Semantic query and text mining tool☆22Updated last year
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Text annotation tool for team collaboration☆41Updated last year
- ☆41Updated 5 years ago
- Python library for working with BioC files☆13Updated 7 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆44Updated 3 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆41Updated last year
- Sample code that demonstrates the use of the NCBO REST services☆44Updated last year
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago
- ☆55Updated 5 years ago
- ☆73Updated last year
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆86Updated 9 months ago
- Knowledge graphs generation from unstructured text.☆71Updated 4 months ago