☆72May 31, 2022Updated 4 years ago
Alternatives and similar repositories for SemRep
Users that are interested in SemRep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transforming SemRep Predications into an Open Biomedical Linked Data Resource☆11Jan 26, 2018Updated 8 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆43Jun 19, 2026Updated last week
- Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning [NAACL 2022]☆19Jan 27, 2023Updated 3 years ago
- A near real-time named-entity recognizer☆66May 20, 2026Updated last month
- AGATHA: Automatic Graph-mining And Transformer based Hypothesis generation Approach☆61Jun 17, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆56Aug 26, 2018Updated 7 years ago
- A tutorial for the ROBOT command line tool.☆17Sep 24, 2022Updated 3 years ago
- System for Medical Concept Extraction and Linking☆445Aug 12, 2024Updated last year
- NCATS Biomedical Translator Reasoners Standard API☆43May 14, 2026Updated last month
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆63Jun 13, 2026Updated 2 weeks ago
- FHIR Ontop OMOP Implementation☆21May 8, 2024Updated 2 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆88Mar 26, 2026Updated 3 months ago
- ☆26Mar 17, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Data structures and code to read/write BioC XML and Json.☆34Aug 21, 2023Updated 2 years ago
- Retrieve and process PubTator annotations☆44Aug 10, 2023Updated 2 years ago
- The PomBase community curation tool☆19Updated this week
- A scraper for bioRxiv☆12Apr 12, 2023Updated 3 years ago
- Utility for cui2vec in Go☆13Feb 25, 2023Updated 3 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆80Jun 28, 2022Updated 4 years ago
- ☆101Feb 25, 2022Updated 4 years ago
- Drug repurposing for COVID-19 using literature-based discovery☆31Sep 6, 2022Updated 3 years ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆44Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An R package for visualizing confounder control in meta-analyses☆11Jan 17, 2023Updated 3 years ago
- This repository contains the data and code created under the project NLP4Rare-cm-uc3m.☆10Sep 14, 2021Updated 4 years ago
- KGX is a Python library for exchanging Knowledge Graphs☆142Jun 17, 2026Updated last week
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆345Nov 9, 2021Updated 4 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆40Aug 28, 2020Updated 5 years ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆28Jun 12, 2023Updated 3 years ago
- The JSON file for the ICD-9-CM and ICD-10-CM hierarchy, including diagnosis codes and procedure codes☆14Jan 26, 2023Updated 3 years ago
- Knowledge graphs generation from unstructured text.☆71Jan 31, 2025Updated last year
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆14May 25, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆160May 3, 2024Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguation☆53Jun 11, 2026Updated 2 weeks ago
- A R Bioconductor package for accessing MyGene.info services☆11Jun 22, 2018Updated 8 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- [arXiv 2025] Pre-training script for Clinical ModernBERT☆35Apr 29, 2025Updated last year
- project GCN-VAE for knowledge graphs☆16Aug 27, 2020Updated 5 years ago
- Tools for curating biomedical training data for large-scale language modeling☆502Dec 9, 2024Updated last year