Alternatives and similar repositories for SemRep

Users that are interested in SemRep are comparing it to the libraries listed below

• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆27Updated 3 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated 2 years ago
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆44Updated 3 months ago
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆41Updated last year
• bio-ontology-research-group / machine-learning-with-ontologies
  ☆131Updated 2 years ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆61Updated 3 months ago
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆194Updated last year
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 5 years ago
• bio-ontology-research-group / opa2vec
  Turning Ontologies Plus Annotation Properties into Vectors
  ☆35Updated 5 years ago
• DiseaseOntology / SymptomOntology
  The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…
  ☆42Updated last year
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago
• rossanez / KGen
  Knowledge graphs generation from unstructured text.
  ☆71Updated 8 months ago
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated 2 months ago
• chanzuckerberg / ChemDisGene
  Bio relation extraction labeled dataset
  ☆45Updated 3 years ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• SmartDataAnalytics / BioKEEN
  A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…
  ☆45Updated 3 years ago
• ncbi-nlp / TeamTat
  Text annotation tool for team collaboration
  ☆42Updated last year
• lasigeBioTM / BiOnt
  BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
  ☆27Updated last year
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 7 years ago
• RTXteam / RTX-KG2
  Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
  ☆48Updated last week
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆57Updated 8 months ago
• clinicalml / HealthKnowledgeGraph
  Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data
  ☆101Updated 4 years ago
• dmis-lab / BERN2
  BERN2: an advanced neural biomedical namedentity recognition and normalization tool
  ☆196Updated last year
• bio-ontology-research-group / ontology-tutorial
  Ontology Tutorial
  ☆73Updated 2 years ago
• ncbi-nlp / BioWordVec
  ☆152Updated last year
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆56Updated 2 years ago
• acadTags / Rare-disease-identification
  Rare disease identification from free-text clinical notes with ontologies and weak supervision
  ☆32Updated 2 years ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆70Updated 5 months ago
• ncbo / umls2rdf
  These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…
  ☆85Updated last year