KalinNonchev / gnomAD_DBLinks
This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.
☆48Updated last month
Alternatives and similar repositories for gnomAD_DB
Users that are interested in gnomAD_DB are comparing it to the libraries listed below
Sorting:
- Copy number calling and variant classification using targeted short read sequencing☆136Updated 2 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆79Updated this week
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆130Updated 10 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- A small-RNA sequencing analysis pipeline☆87Updated last month
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆147Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆112Updated last year
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆97Updated last month
- Software program for checking sample matching for NGS data☆134Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 8 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆108Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆162Updated 10 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- a Medical Genetics Sequence Analysis Pipeline☆83Updated this week
- Analysis of Chromosome Conformation Capture data (Hi-C)☆99Updated last week
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 7 months ago
- Tools to work with GWAS-VCF summary statistics files☆122Updated 9 months ago
- MOsaic CHromosomal Alterations (MoChA) caller☆86Updated 5 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆173Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆149Updated 10 months ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆149Updated last week
- Characterization of Germline variants☆98Updated 3 years ago
- A Python-based EGA download client☆101Updated 9 months ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆112Updated 6 years ago
- ☆116Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆102Updated last month