KalinNonchev / gnomAD_DB
This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.
☆37Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for gnomAD_DB
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 8 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆68Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆71Updated this week
- R package designed to simplify structural variant analysis☆69Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated 2 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- BigWig and BAM utilities☆92Updated 7 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆94Updated 3 years ago
- ☆53Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆101Updated 4 months ago
- ☆19Updated this week
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆38Updated last year
- ☆65Updated last year
- A software for calculating telomere length☆67Updated 6 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆60Updated 2 weeks ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆120Updated 2 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated 3 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 3 months ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 6 years ago
- Battenberg algorithm and associated implementation script☆51Updated 4 years ago
- Quality of RNA-Seq Toolset☆52Updated 5 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆66Updated this week
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆63Updated this week
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆62Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆28Updated 6 years ago
- Tip and tricks for BAM files☆82Updated 6 years ago
- 🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips☆61Updated this week
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆87Updated 2 months ago