Benchmarking study of machine learning methods for prediction of synthetic lethality
☆22Nov 15, 2024Updated last year
Alternatives and similar repositories for SL_benchmark
Users that are interested in SL_benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆35Aug 1, 2023Updated 3 years ago
- PiLSL is a pairwise interaction learning-based graph neural network (GNN) model for prediction of synthetic lethality (SL) as anti-cancer…☆14Dec 4, 2024Updated last year
- ☆33Jan 22, 2025Updated last year
- The code for NeurIPS 2023 paper DSR☆14Oct 8, 2023Updated 2 years ago
- NeST-VNN repo☆12Jun 13, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Graph attention-based fusion of pathology images and gene expression for prediction of cancer survival☆13Dec 11, 2024Updated last year
- ☆20Dec 23, 2025Updated 9 months ago
- Yet another dynamic batch sampler for variable sequence data in PyTorch.☆13Dec 9, 2021Updated 4 years ago
- An App to provision the App of Device Owner on other devices☆12Mar 13, 2018Updated 8 years ago
- Matlab code for spectral CT one-step inversion. Implementation of five different methods☆13May 22, 2018Updated 8 years ago
- Package to preprocess ontologies and train OntoVAE models.☆16Jan 7, 2025Updated last year
- Few shot learning for cancer☆37Nov 17, 2021Updated 4 years ago
- [RECOMB 2023] Official implementation of "Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction".☆14Nov 21, 2023Updated 2 years ago
- A PyTorch-Lightning based deep learning framework.☆11Jun 2, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- Tree-Invent: A novel molecular generative model constrained with topological tree☆14Jul 26, 2023Updated 3 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆155Aug 14, 2024Updated 2 years ago
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- ☆13Dec 29, 2021Updated 4 years ago
- Drug Discovery Intelligence plugin for Claude Code. AI-powered target validation, competitive intelligence, literature analysis & clinic…☆19Jan 4, 2026Updated 8 months ago
- ☆101Aug 10, 2026Updated last month
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Dec 26, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Active learning for optimal intervention design in causal models☆17Nov 8, 2023Updated 2 years ago
- Supervised Vector-Quantized Autoencoder☆20Jul 6, 2021Updated 5 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- This repo will contain the code for training DINO models and extracting features☆18Aug 4, 2023Updated 3 years ago
- Investigating the role of pre-training dataset size and diversity on the performance of single-cell foundation models☆21May 12, 2026Updated 4 months ago
- ☆75Jan 14, 2026Updated 8 months ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- MPI exercises used for the Introduction to MPI course☆13Aug 21, 2024Updated 2 years ago
- Microsoft Azure HPC & Big Compute☆15Aug 18, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆20Sep 30, 2018Updated 8 years ago
- Distributed Feedback-Looped Networks☆10Jan 15, 2020Updated 6 years ago
- Discrete Bayesian optimization with LLMs, PEFT finetuning methods, and the Laplace approximation.☆23Jul 30, 2024Updated 2 years ago
- ☆14Aug 10, 2026Updated last month
- This repository is retired software☆14Oct 29, 2015Updated 10 years ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Jun 1, 2021Updated 5 years ago
- ☆18Apr 23, 2026Updated 5 months ago