JieZheng-ShanghaiTech / SL_benchmark
Benchmarking study of machine learning methods for prediction of synthetic lethality
☆11Updated last week
Related projects ⓘ
Alternatives and complementary repositories for SL_benchmark
- Contextual AI models for single-cell protein biology☆71Updated last month
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆30Updated last year
- ☆22Updated last month
- TEIM: TCR-Epitope Interaction Modeling☆44Updated last year
- ☆30Updated last year
- A Deep Learning based Efficacy Prediction System for drug discovery☆62Updated 2 years ago
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆34Updated last month
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆15Updated 3 months ago
- ☆72Updated last month
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆34Updated last year
- Single-Cell (Perturbation) Model Library☆22Updated 2 weeks ago
- ☆44Updated 11 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆66Updated 7 months ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆23Updated 2 weeks ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆51Updated 3 months ago
- ☆19Updated 2 years ago
- ☆77Updated last year
- ☆40Updated 3 years ago
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆20Updated 2 weeks ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆15Updated last year
- ☆167Updated last week
- ☆33Updated 2 months ago
- Geometric deep learning of protein–DNA binding specificity☆49Updated last month
- ☆11Updated last year
- ☆83Updated 4 months ago
- Latent Diffusion Model for DNA Sequence Generation☆20Updated 3 weeks ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆104Updated 3 months ago
- Paper collection for single cell foundation models☆27Updated 8 months ago
- A visible neural network model for drug response prediction☆129Updated last year
- ☆44Updated 9 months ago