Alternatives and similar repositories for SL_benchmark:

Users that are interested in SL_benchmark are comparing it to the libraries listed below

• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆35Updated last week
• kekegg / DLEPS
  A Deep Learning based Efficacy Prediction System for drug discovery
  ☆64Updated 2 years ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆79Updated 4 months ago
• myzhengSIMM / TranSiGen
  ☆24Updated last week
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆105Updated last week
• bm2-lab / PanPep
  ☆46Updated last year
• TencentAILabHealthcare / DeepAIR
  ☆33Updated last year
• CatIIIIIIII / RNAErnie
  Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"
  ☆40Updated 3 months ago
• a96123155 / UTR-LM
  ☆73Updated 3 months ago
• yhchen1123 / CoGO
  CoGO: a contrastive learning framework to predict disease similarity based on gene network and ontology structure
  ☆16Updated 4 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆62Updated 2 weeks ago
• jkobject / geneformer
  ☆48Updated last year
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆36Updated last month
• JieZheng-ShanghaiTech / KG4SL
  Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …
  ☆31Updated last year
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆34Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆78Updated 3 weeks ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆67Updated 9 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆77Updated 10 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆78Updated 2 years ago
• jianglikun / DeepTTC
  DeepTTC: a transformer-based model for predicting cancer drug response
  ☆15Updated last year
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆93Updated 5 months ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆48Updated 2 years ago
• pengxingang / TEIM
  TEIM: TCR-Epitope Interaction Modeling
  ☆45Updated last year
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆60Updated 3 months ago
• YihePang / DisoFLAG
  Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model
  ☆15Updated 5 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆29Updated 2 months ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆39Updated 11 months ago
• TencentAILabHealthcare / ER-BERT
  ☆11Updated last year
• KatarinaYuan / awesome-single-cell-foundation
  Paper collection for single cell foundation models
  ☆28Updated 10 months ago
• piercelab / tcrmodel2
  ☆36Updated 3 months ago