Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network (GNN)-based model that uses knowledge graph for SL prediction.
☆35Aug 1, 2023Updated 3 years ago
Alternatives and similar repositories for KG4SL
Users that are interested in KG4SL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Benchmarking study of machine learning methods for prediction of synthetic lethality☆22Nov 15, 2024Updated last year
- ☆12Feb 10, 2023Updated 3 years ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆29Aug 7, 2026Updated 2 months ago
- ☆20Jun 14, 2024Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Example notebooks that illustrate how to generate knowledge-based features. Features can be used in a variety of ML models, including rec…☆12Feb 23, 2022Updated 4 years ago
- ☆10Jan 26, 2022Updated 4 years ago
- ☆13Nov 15, 2020Updated 5 years ago
- The source code for "MG-BERT: Multi-Graph Augmented BERT for Masked Language Modeling" paper (NAACL 2021, TextGraphs-15).☆12Jun 11, 2021Updated 5 years ago
- code for Gogleva et al manuscript☆47Nov 30, 2022Updated 3 years ago
- A VGAE-based model to infer transcription factor regulatory network☆29Jul 25, 2022Updated 4 years ago
- ☆12Mar 16, 2024Updated 2 years ago
- PiLSL is a pairwise interaction learning-based graph neural network (GNN) model for prediction of synthetic lethality (SL) as anti-cancer…☆14Dec 4, 2024Updated last year
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Data-Driven Approach to Predicting Successes and Failures of Clinical Trials☆22Oct 19, 2019Updated 7 years ago
- Molecular Structure Generation☆35Aug 13, 2024Updated 2 years ago
- A simulation framework to analyze signal flows in complex networks☆15Jun 11, 2026Updated 4 months ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆16Apr 15, 2026Updated 6 months ago
- Graph Neural Networks with Multiple Prior Knowledge for Multi-Omics Data Analysis☆11May 1, 2023Updated 3 years ago
- Similarity Ensemble Approach with deep learning substance fingerprints☆63Aug 10, 2016Updated 10 years ago
- Gene Neural Network (GNN)☆12Oct 5, 2019Updated 7 years ago
- Deep learning for compound price prediction☆19Aug 22, 2024Updated 2 years ago
- Code from 'Uncovering the Folding Landscape of RNA Secondary Structure with Deep Graph Embeddings"☆10Aug 19, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python - 100天从新手到大师☆12Feb 29, 2024Updated 2 years ago
- library for interfacing with NCBI's Entrez eUtils web service☆11Aug 23, 2012Updated 14 years ago
- ☆34Nov 24, 2020Updated 5 years ago
- ☆32Jan 16, 2020Updated 6 years ago
- The code is for our AAAI2023 paper: Efficient Embeddings of Logical Variables for Query Answering over Incomplete Knowledge Graphs (Ding…☆10Dec 17, 2022Updated 3 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆14Mar 31, 2020Updated 6 years ago
- MeSH Enrichment and Semantic analyses☆13Sep 28, 2026Updated 3 weeks ago
- Prediction of compound synthesis accessibility bashed on reaction knowledge graph☆17May 24, 2022Updated 4 years ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆32Mar 13, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Official code for the publication "HyFactor: Hydrogen-count labelled graph-based defactorization Autoencoder".☆17Jan 17, 2023Updated 3 years ago
- Trends in scientific publishing delays☆11Aug 20, 2021Updated 5 years ago
- deepSimDEF offers single- and multi-channel deep learning models for functional analysis of genes using Gene Ontology annotations of gene…☆13May 13, 2022Updated 4 years ago
- Read the Meteor tutorials in a minimalist app☆17Jan 7, 2019Updated 7 years ago
- Simple scVI implementation☆13Updated this week
- Implementation of Stochastic Depth Networks in Keras☆13Sep 10, 2016Updated 10 years ago
- [Briefings in Bioinformatics'20] Integrating multi-network topology for gene function prediction using deep neural networks☆14Sep 5, 2019Updated 7 years ago