Alternatives and similar repositories for Sagittarius

Users that are interested in Sagittarius are comparing it to the libraries listed below

• linjc16 / Pisces
  [RECOMB 2023] Official implementation of "Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction".
  ☆14Updated last year
• KatarinaYuan / awesome-single-cell-foundation
  Paper collection for single cell foundation models
  ☆32Updated last year
• HanwenXuTHU / BioTranslatorProject
  ☆33Updated last year
• myzhengSIMM / TranSiGen
  ☆28Updated 3 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆84Updated last year
• jsxlei / scCLIP
  ☆28Updated last year
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆32Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆92Updated last month
• OmicsML / scMoFormer
  Single-Cell Multimodal Prediction via Transformer
  ☆27Updated last year
• liugangcode / InfoAlign
  The code for "Learning Molecular Representation in a Cell"
  ☆33Updated 2 months ago
• bsml320 / VAEN
  A deep generative neural network based approach to impute drug response
  ☆20Updated 3 years ago
• JieZheng-ShanghaiTech / KG4SL
  Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …
  ☆33Updated last year
• microsoft / zero-shot-scfoundation
  ☆62Updated 8 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆69Updated 4 months ago
• Genentech / PerturbQA
  ☆13Updated 2 months ago
• Barabasi-Lab / COVID-19
  Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19
  ☆27Updated 4 years ago
• yhchen1123 / CoGO
  CoGO: a contrastive learning framework to predict disease similarity based on gene network and ontology structure
  ☆16Updated 7 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆58Updated 4 months ago
• jimmylihui / GenBench
  ☆21Updated 3 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆32Updated 2 weeks ago
• HelloWorldLTY / MuSe-GNN
  [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"
  ☆30Updated 10 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆61Updated 2 months ago
• OmicsML / awesome-AI_Scientist-agents-biology-papers
  ☆24Updated 3 weeks ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆28Updated 9 months ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆47Updated 5 months ago
• violet-sto / TGSA
  PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…
  ☆24Updated 3 years ago
• yhr91 / GEARS_misc
  ☆20Updated 7 months ago
• aristoteleo / awesome-bioagent-papers
  Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.
  ☆36Updated this week
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆35Updated 7 months ago
• genbio-ai / ModelGenerator
  AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…
  ☆56Updated this week