☆74Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for multiscale-interactome
Users that are interested in multiscale-interactome are comparing it to the libraries listed below
Sorting:
- The official code implementation for DREAMwalk in Python.☆30Jul 28, 2023Updated 2 years ago
- PhenoPLIER☆15Apr 8, 2024Updated last year
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- L1000 peak deconvolution based on Bayesian analysis☆28Oct 10, 2021Updated 4 years ago
- Read and query HDT documents with ease in Python☆13Mar 18, 2020Updated 5 years ago
- The Supplementary data in the paper "A Survey and Systematic Assessment of Computational Methods for Drug Response Prediction"☆12Sep 27, 2019Updated 6 years ago
- ☆58Nov 15, 2020Updated 5 years ago
- Multimodal Transformers for biomedical text and Knowledge Graph data☆34Mar 3, 2023Updated 3 years ago
- Drug repositioning with adaptive graph convolutional networks☆17Sep 22, 2024Updated last year
- Network-based module discovery algorithm with high rate of empirically-validated term calls☆14Oct 22, 2023Updated 2 years ago
- Work on designing a graph co-attention algorithm.☆18Jul 22, 2023Updated 2 years ago
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆17Apr 9, 2024Updated last year
- ☆20Aug 28, 2022Updated 3 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- A Knowledge Graph for Relational Learning On Biological Data☆109Mar 21, 2024Updated last year
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆158May 3, 2024Updated last year
- NetICS: network-based integration of multi-omics data for prioritizing cancer genes☆16Jun 27, 2021Updated 4 years ago
- ☆21Sep 1, 2022Updated 3 years ago
- ☆16Sep 5, 2023Updated 2 years ago
- User-friendly extensions to the Disease Ontology☆20Sep 9, 2016Updated 9 years ago
- Algorithms for prediction of drug-target interactions via computational (chemogenomic) methods☆48Apr 26, 2019Updated 6 years ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆140Jul 19, 2022Updated 3 years ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆19May 22, 2020Updated 5 years ago
- ☆20Nov 30, 2021Updated 4 years ago
- Python package to load and query ARCHS4 data☆26Jul 25, 2025Updated 7 months ago
- ☆24Updated this week
- Network-based project to explore gene connectivity through biological scales☆23Oct 21, 2024Updated last year
- ☆26Feb 23, 2026Updated last week
- Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported f…☆585Sep 11, 2025Updated 5 months ago
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 3 years ago
- Graph Embedding Evaluation / Code and Datasets for "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations" (Bi…☆230Apr 14, 2020Updated 5 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆69Nov 7, 2025Updated 4 months ago
- Enzyme-constrained genome-scale models in python☆35Oct 25, 2023Updated 2 years ago
- A knowledge graph and a set of tools for drug repurposing☆671Apr 19, 2022Updated 3 years ago
- ☆27Jan 14, 2025Updated last year
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆31Sep 27, 2021Updated 4 years ago
- ☆30Oct 18, 2021Updated 4 years ago
- Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science☆1,210Jul 13, 2025Updated 7 months ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆113Apr 2, 2022Updated 3 years ago