snap-stanford / multiscale-interactomeLinks
☆68Updated 2 years ago
Alternatives and similar repositories for multiscale-interactome
Users that are interested in multiscale-interactome are comparing it to the libraries listed below
Sorting:
- Network-based project to explore gene connectivity through biological scales☆23Updated 10 months ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆112Updated 3 years ago
- ☆57Updated 4 years ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆123Updated 3 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆50Updated 4 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆27Updated 4 years ago
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆34Updated 2 years ago
- A Knowledge Graph for Relational Learning On Biological Data☆106Updated last year
- Contextual AI models for single-cell protein biology☆88Updated 7 months ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆134Updated 3 years ago
- ☆34Updated 7 years ago
- Function prediction using a deep ontology-aware classifier☆84Updated 2 years ago
- Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network☆88Updated 2 years ago
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Updated 4 years ago
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆236Updated 3 months ago
- ☆19Updated 3 years ago
- ☆57Updated 6 years ago
- ☆23Updated 2 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆52Updated last month
- Paper collection for single cell foundation models☆34Updated last year
- The official code implementation for DREAMwalk in Python.☆26Updated 2 years ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆123Updated 7 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆73Updated 6 months ago
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nat…☆98Updated 3 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 4 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 4 years ago
- Random Walk with Restart on Multiplex and Heterogeneous Biological Networks☆36Updated 5 years ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆16Updated 2 years ago
- ☆217Updated 2 years ago