violet-sto / TGSA
PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarity Augmentation"
☆24Updated 3 years ago
Alternatives and similar repositories for TGSA:
Users that are interested in TGSA are comparing it to the libraries listed below
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆27Updated 3 years ago
- ☆84Updated 2 years ago
- ☆38Updated last year
- The official code implementation for DREAMwalk in Python.☆18Updated last year
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Updated 3 years ago
- ☆13Updated last year
- ☆52Updated 8 months ago
- Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning☆17Updated last month
- ☆14Updated 2 years ago
- Multi-modal co-attention for drug-target interaction annotation and Its Application to SARS-CoV-2☆17Updated 2 years ago
- ☆28Updated 3 years ago
- ☆52Updated 9 months ago
- Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".☆79Updated 3 years ago
- ☆3Updated 2 years ago
- A bi-directional attention neural network for compound–protein interaction and binding affinity prediction.☆30Updated 2 years ago
- Interpretable bilinear attention network with domain adaptation improves drug-target prediction.☆121Updated 2 years ago
- ☆36Updated 11 months ago
- ☆50Updated 8 months ago
- A unified framework for predicting drug-target interactions, binding affinities and activation/inhibition mechanisms.☆39Updated 2 months ago
- Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding☆30Updated 2 years ago
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆33Updated last year
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Updated 3 years ago
- ☆27Updated 4 years ago
- ☆28Updated 3 months ago
- codes for KPGT (Knowledge-guided Pre-training of Graph Transformer)☆106Updated 7 months ago
- Bioinformatics'2022 PerceiverCPI: A nested cross-attention network for compound-protein interaction prediction☆35Updated last year
- ☆9Updated last year
- ☆9Updated 3 years ago
- ☆16Updated 3 years ago
- ☆23Updated last year