Codebase for BioPathNet to predict links in biomedical knowledge graphs
☆43Feb 19, 2026Updated 5 months ago
Alternatives and similar repositories for BioPathNet
Users that are interested in BioPathNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A modern multimodal knowledge graph with type-specific metadata across biomedical domains.☆111Aug 3, 2026Updated last week
- The official code implementation for DREAMwalk in Python.☆32Jul 28, 2023Updated 3 years ago
- ☆61Apr 16, 2025Updated last year
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.☆15Updated this week
- GraphQL and Rest API rewrite of the current Open Targets platform API☆19Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Code for "Foundation Models Improve Perturbation Response Prediction"☆28Apr 16, 2026Updated 3 months ago
- The BioContextAI Registry for biomedical MCP servers☆21Jul 29, 2026Updated last week
- Graph AI for Quantitative Evaluation of Compatibility in Traditional Chinese Medicine (TCM)☆35Apr 27, 2026Updated 3 months ago
- 利用知识图谱嵌入模型研究阿尔茨海默病的药物重定位.☆11May 15, 2023Updated 3 years ago
- TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design☆283May 6, 2024Updated 2 years ago
- Reconstructing True 3D Spatial Omics at Single-Cell Resolution☆19May 13, 2026Updated 2 months ago
- CapsNet implementation in keras for R☆12May 8, 2018Updated 8 years ago
- ☆11Jun 28, 2023Updated 3 years ago
- An r interface to perform ROMA☆10Aug 24, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reproducibility repository for the Human Neural Organoid Atlas publication☆51Dec 16, 2024Updated last year
- Using Machine Learning to Identify Glioblastoma patients with NF1 inactivation☆11Dec 19, 2016Updated 9 years ago
- benchmarking AI-powered docking methods from the perspective of virtual screening☆36Dec 26, 2024Updated last year
- The code for gene set analysis by accessing domain databases☆116Dec 25, 2025Updated 7 months ago
- BioContextAI Knowledgebase MCP server for biomedical agentic AI☆28Jan 12, 2026Updated 6 months ago
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆130Oct 3, 2025Updated 10 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆118Jul 6, 2025Updated last year
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆34Jun 27, 2026Updated last month
- Cours de science des données en 1A à Mines Paris - PSL (2024)☆14Jul 9, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆17May 14, 2022Updated 4 years ago
- Coarse-grained and Multi-dimensional Data-driven molecular generation (CMD-GEN). This framework bridges three-dimensional ligand-protein …☆18Sep 13, 2025Updated 10 months ago
- ☆13Jul 29, 2026Updated last week
- Build PharMeBINet from different sources.☆22Jul 14, 2026Updated 3 weeks ago
- A comprehensive analysis platform for exploring traditional Chinese medicine☆12Apr 10, 2024Updated 2 years ago
- Masked Omics Modeling for Multimodal Representation Learning across Histopathology and Molecular Profiles☆17Jul 29, 2026Updated last week
- The Spezi FHIR Standard & Related Modules☆13Apr 20, 2026Updated 3 months ago
- ☆11Jun 2, 2021Updated 5 years ago
- [CIKM 2024] EMERGE: Enhancing Multimodal Electronic Health Records Predictive Modeling with Retrieval-Augmented Generation☆16May 24, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Connecting AI to biomedical data☆15May 14, 2026Updated 2 months ago
- The official implementation of paper "Towards Synergistic Path-based Explanations for Knowledge Graph Completion: Exploration and Evaluat…☆15Feb 28, 2025Updated last year
- ☆17Apr 29, 2026Updated 3 months ago
- Original materials for the "Introduction to Solving Biological Problems with Python" 2 days course☆10Jun 25, 2018Updated 8 years ago
- NCATS Biomedical Translator Reasoners Standard API☆43Jul 13, 2026Updated 3 weeks ago
- [ICLR'25] Reasoning-Enhanced Healthcare Predictions with Knowledge Graph Community Retrieval☆64Apr 14, 2025Updated last year
- 1140 Dandisets, 965.1 TB total. DataLad super-dataset of all Dandisets from https://github.com/dandisets☆14May 28, 2026Updated 2 months ago