Blair1213 / TREE
Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning
☆18Updated last month
Alternatives and similar repositories for TREE
Users that are interested in TREE are comparing it to the libraries listed below
Sorting:
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆27Updated 3 years ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆16Updated last year
- A deep generative neural network based approach to impute drug response☆20Updated 3 years ago
- ☆28Updated 3 months ago
- PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…☆24Updated 3 years ago
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆33Updated last year
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆27Updated 4 years ago
- Contextual AI models for single-cell protein biology☆86Updated 2 months ago
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Updated 3 years ago
- ☆56Updated 5 years ago
- ☆14Updated 2 years ago
- The official code implementation for DREAMwalk in Python.☆18Updated last year
- ☆84Updated 2 years ago
- drugbank相关数据的处理，包括获取药物sdf结构文件，drug相关信息，drug作用相关蛋白信息，drugbank中drug id与其他数据库的映射，protein蛋白相关信息到其他数据库的映射☆20Updated 3 years ago
- ☆66Updated last year
- ☆34Updated 2 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆54Updated 4 years ago
- ☆16Updated 3 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆68Updated 2 months ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Updated 3 years ago
- ☆17Updated 7 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆59Updated 9 months ago
- Interpretable bilinear attention network with domain adaptation improves drug-target prediction.☆121Updated 2 years ago
- Multi-Teacher Distillation for Protein embedding☆11Updated 11 months ago
- Benchmarking study of machine learning methods for prediction of synthetic lethality☆15Updated 5 months ago
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆17Updated last year
- ☆19Updated last year
- Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".☆80Updated 3 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆99Updated 7 months ago
- A unified framework for predicting drug-target interactions, binding affinities and activation/inhibition mechanisms.☆39Updated 3 months ago