Blair1213 / TREELinks
[NBME] Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning
☆20Updated 4 months ago
Alternatives and similar repositories for TREE
Users that are interested in TREE are comparing it to the libraries listed below
Sorting:
- ☆30Updated 6 months ago
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆34Updated 2 years ago
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆28Updated 3 years ago
- Contextual AI models for single-cell protein biology☆88Updated 5 months ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆16Updated 2 years ago
- A deep generative neural network based approach to impute drug response☆21Updated 4 years ago
- The official code implementation for DREAMwalk in Python.☆22Updated 2 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆27Updated 4 years ago
- Benchmarking study of machine learning methods for prediction of synthetic lethality☆17Updated 8 months ago
- ☆16Updated 3 years ago
- PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…☆24Updated 3 years ago
- Interpretable bilinear attention network with domain adaptation improves drug-target prediction.☆126Updated 2 years ago
- ☆88Updated 2 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 4 years ago
- ☆57Updated 6 years ago
- ☆14Updated 3 years ago
- An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.☆154Updated 3 years ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆50Updated 4 years ago
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Updated 3 years ago
- drugbank相关数据的处理,包括获取药物sdf结构文件,drug相关信息,drug作用相关蛋白信息,drugbank中drug id与其他数据库的映射,protein蛋白相关信息到其他数据库的映射☆21Updated 4 years ago
- Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network☆86Updated 2 years ago
- ☆54Updated 11 months ago
- ☆67Updated 2 years ago
- ☆35Updated 2 years ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Updated 4 years ago
- TransDTI: Transformer-based language models for estimating DTIs and building a drug-recommendation workflow☆12Updated 2 years ago
- ☆18Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated last year
- iLearn, a Python Toolkit and Web Server Integrating the Functionality of Feature Calculation, Extraction, Clustering, Feature Selection, …☆83Updated 3 years ago