Alternatives and similar repositories for BLAST-bioinfor-tool

Users that are interested in BLAST-bioinfor-tool are comparing it to the libraries listed below

• Jwomers / burrows_wheeler_alignment

  View on GitHub
  A python implementation of the Burrows Wheeler Alignment for DNA sequence matching
  ☆15Aug 23, 2018Updated 7 years ago
• FunctionLab / DeepArk

  View on GitHub
  Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning
  ☆17Apr 6, 2021Updated 4 years ago
• NickJD / StORF-Reporter

  View on GitHub
  Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named S…
  ☆17Jan 15, 2026Updated last month
• ijustwanthaveaname / Genefamily_pipeline

  View on GitHub
  A pipeline to identify gene family using mutiple tools and scripts.
  ☆11Aug 22, 2021Updated 4 years ago
• evocellnet / ptm_hotspots

  View on GitHub
  Estimate PTM hotspots in protein sequence alignments
  ☆14Feb 6, 2019Updated 7 years ago
• RickGelhausen / HRIBO

  View on GitHub
  We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…
  ☆12May 22, 2025Updated 8 months ago
• cpbotha / ansible-ubu-to-pytorch

  View on GitHub
  simple ansible playbook to take clean ubuntu 18.04 to CUDA 10, PyTorch 1.0, fastai, miniconda heaven
  ☆12Dec 16, 2018Updated 7 years ago
• rothlab / chromozoom

  View on GitHub
  ChromoZoom is a fast, fluid web-based genome browser
  ☆48Mar 15, 2021Updated 4 years ago
• khodosevichlab / CellAnnotatoR

  View on GitHub
  Automated marker-based annotation of cell types
  ☆14Aug 8, 2022Updated 3 years ago
• genetronhealth / uvc

  View on GitHub
  UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)
  ☆14May 18, 2025Updated 8 months ago
• PacificBiosciences / pbampliconclustering

  View on GitHub
  exploratory scripts for clustering ccs amplicon data
  ☆11Feb 2, 2021Updated 5 years ago
• oicr-gsi / debarcer

  View on GitHub
  Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
  ☆15Apr 28, 2021Updated 4 years ago
• FPvisualization / fpvisualization.github.io

  View on GitHub
  Visualization of fluorescent protein properties with d3.js. Obsolete.
  ☆12Mar 12, 2024Updated last year
• secrierlab / EMT

  View on GitHub
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Jan 24, 2023Updated 3 years ago
• kundajelab / seqdataloader

  View on GitHub
  Sequence data label generation and ingestion into deep learning models
  ☆12Nov 17, 2021Updated 4 years ago
• julianeweller / MinsePIE

  View on GitHub
  Modelling insertion efficiency for Prime Insertion Experiments
  ☆13Apr 1, 2024Updated last year
• aziele / pairwise-sequence-alignment

  View on GitHub
  A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water
  ☆16Feb 27, 2025Updated 11 months ago
• chriscainx / gastric-cancer

  View on GitHub
  ☆16Mar 2, 2023Updated 2 years ago
• Gaius-Augustus / clamsa

  View on GitHub
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆13Nov 21, 2024Updated last year
• AlgoLab / HapCHAT

  View on GitHub
  Adaptive haplotype assembly for efficiently leveraging high coverage in long reads
  ☆13Sep 4, 2018Updated 7 years ago
• ChnMasterOG / KmerGO

  View on GitHub
  KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…
  ☆13Mar 6, 2023Updated 2 years ago
• lindenb / samtools-utilities

  View on GitHub
  Utilities for Samtools ( http://samtools.sourceforge.net/ )
  ☆18Sep 26, 2011Updated 14 years ago
• pgdurand / BlastViewer

  View on GitHub
  This package contains the BLAST Viewer Tool.
  ☆13Apr 7, 2023Updated 2 years ago
• gymreklab / mutea-autosomal

  View on GitHub
  Mutation rate analysis of autosomal loci
  ☆15Jun 25, 2020Updated 5 years ago
• vibrant-data-labs / Tag2Network

  View on GitHub
  Build similarity network from items with associated tags (for example documents with keywords)
  ☆16Feb 16, 2023Updated 3 years ago
• mbreese / swalign

  View on GitHub
  Smith-Waterman local aligner
  ☆73Sep 29, 2022Updated 3 years ago
• Baldridge37 / RNAseq_with_Hisat2_stringtie

  View on GitHub
  RNAseq analysis with Hisat2, stringtie, and ballgown
  ☆17Aug 9, 2019Updated 6 years ago
• kjgleason / Primo

  View on GitHub
  Primo
  ☆16Sep 2, 2021Updated 4 years ago
• bnbowman / HlaTools

  View on GitHub
  A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing
  ☆22Aug 29, 2016Updated 9 years ago
• SynBioDex / pySBOL2

  View on GitHub
  A pure Python implementation of the SBOL standard.
  ☆22Feb 13, 2025Updated last year
• AmpliconSuite / AmpliconReconstructorOM

  View on GitHub
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆19Nov 13, 2023Updated 2 years ago
• bioinfo-biols / CIRI-long

  View on GitHub
  Circular RNA Identification for Nanopore Sequencing
  ☆22May 23, 2024Updated last year
• oushujun / MTEC

  View on GitHub
  A repo contains historical and updated MTEC libraries.
  ☆18Feb 6, 2020Updated 6 years ago
• kundajelab / alzheimers_parkinsons

  View on GitHub
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆46Aug 12, 2020Updated 5 years ago
• maximilianh / crisporWebsite

  View on GitHub
  All source code of the crispor.org website
  ☆87Updated this week
• apietrelli / myVCF

  View on GitHub
  myVCF: a web-based platform for target and exome mutations data management
  ☆20Apr 13, 2021Updated 4 years ago
• zhanxw / anno

  View on GitHub
  Anno is a variant annotation tool
  ☆24May 18, 2016Updated 9 years ago
• ilyavs / exodus

  View on GitHub
  ☆11Jul 3, 2022Updated 3 years ago
• talkowski-lab / SV-Adjudicator

  View on GitHub
  ☆25Apr 29, 2018Updated 7 years ago