Python implementation of Basic Local Alignment Search Tool (BLAST) , which is the core algorithm in sequence alignment for genomes.
☆77Oct 13, 2023Updated 2 years ago
Alternatives and similar repositories for BLAST-bioinfor-tool
Users that are interested in BLAST-bioinfor-tool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python implementation of the Burrows Wheeler Alignment for DNA sequence matching☆15Aug 23, 2018Updated 7 years ago
- Python implementation of de Bruijn graph for genome assembly☆13May 24, 2014Updated 12 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 5 years ago
- simple ansible playbook to take clean ubuntu 18.04 to CUDA 10, PyTorch 1.0, fastai, miniconda heaven☆11Dec 16, 2018Updated 7 years ago
- This package contains the BLAST Viewer Tool.☆13Apr 7, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Estimate PTM hotspots in protein sequence alignments☆15Feb 6, 2019Updated 7 years ago
- Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named S…☆17Jan 15, 2026Updated 5 months ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 6 years ago
- Smith-Waterman local aligner☆73Sep 29, 2022Updated 3 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 5 years ago
- ☆13Sep 20, 2024Updated last year
- Pembrolizumab-like Antibody Hallucination using AlphaFold2☆16Nov 10, 2023Updated 2 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆25Mar 9, 2026Updated 3 months ago
- ChromoZoom is a fast, fluid web-based genome browser☆48Mar 15, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Native python implementation of SBOL 3.0 specification☆43Mar 26, 2025Updated last year
- Code for the CRISPOR article, all data and code to create figures and analysis☆47Jul 27, 2016Updated 9 years ago
- A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water☆16Feb 27, 2025Updated last year
- A pipeline to identify gene family using mutiple tools and scripts.☆11Aug 22, 2021Updated 4 years ago
- A basic implementation of the UPGMA (Unweighted Pair Group Method with Arithmetic Mean) clustering algorithm in Python.☆13Dec 11, 2015Updated 10 years ago
- ☆23Aug 22, 2019Updated 6 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- A repo contains historical and updated MTEC libraries.☆19May 18, 2026Updated last month
- An implementation of vConv layer.☆11Apr 28, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- All source code of the crispor.org website☆89Updated this week
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 9 months ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14May 22, 2025Updated last year
- Visualization of fluorescent protein properties with d3.js. Obsolete.☆12Mar 12, 2024Updated 2 years ago
- Build similarity network from items with associated tags (for example documents with keywords)☆16Feb 16, 2023Updated 3 years ago
- Utilities for Samtools ( http://samtools.sourceforge.net/ )☆18Sep 26, 2011Updated 14 years ago
- KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…☆13Mar 6, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NCBI-BLAST web service with python backend and HTML5 frontend.☆21Oct 26, 2016Updated 9 years ago
- Some examples on computing MLEs using TensorFlow☆15Sep 8, 2017Updated 8 years ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Jun 4, 2026Updated last month
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Modify existing reference fasta and gff3/gtf files to include a new sequence☆33Feb 27, 2026Updated 4 months ago
- Deep conditional autoregressive models for genome editing sequence-to-sequence problems☆10Jun 29, 2021Updated 5 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year