Accelerated kernel library for genomics
☆111Jul 7, 2025Updated 8 months ago
Alternatives and similar repositories for GKL
Users that are interested in GKL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Jan 31, 2017Updated 9 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- efficient alignment of strings to partially ordered string graphs☆33Jan 31, 2022Updated 4 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated last month
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Sep 16, 2025Updated 6 months ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- ☆12Sep 25, 2024Updated last year
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- DRAGEN open-source mapper☆187Sep 8, 2023Updated 2 years ago
- Global alignment and alignment extension☆142Jun 27, 2023Updated 2 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- ☆315Jan 15, 2026Updated 2 months ago
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆46May 10, 2023Updated 2 years ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated last month
- Bidirectional WFA (Paper)☆49May 20, 2024Updated last year
- Implicit Interval Tree with Interpolation Index☆42Jul 13, 2022Updated 3 years ago
- Falcon Accelerated Genomics Pipelines☆15Oct 1, 2019Updated 6 years ago
- Parallel Sequence to Graph Alignment☆36Nov 26, 2022Updated 3 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- Five implementations of double linked lists to demonstrate generic data structures in C☆18Dec 19, 2019Updated 6 years ago
- The next version of bwa-mem☆824Oct 15, 2025Updated 5 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- C implementation of the Landau-Vishkin algorithm☆35Apr 8, 2022Updated 3 years ago
- my PhD thesis☆36Jul 10, 2019Updated 6 years ago
- ABRA2☆95Dec 2, 2022Updated 3 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- Numerical Encoding for Human Genetic Variants☆42Jun 8, 2023Updated 2 years ago
- Streaming assembly for MinION data☆25Dec 16, 2023Updated 2 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆298Sep 6, 2025Updated 6 months ago