📈 DNA Sequence Visualization for Humans
☆41Jul 10, 2021Updated 4 years ago
Alternatives and similar repositories for squiggle
Users that are interested in squiggle are comparing it to the libraries listed below
Sorting:
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 2 weeks ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- 🧬📈 Turn DNA sequences into interactive visualizations☆13Jan 20, 2023Updated 3 years ago
- Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform☆17Dec 12, 2022Updated 3 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Mar 26, 2020Updated 5 years ago
- Understand DNA structure and how machine learning can be used to work with DNA sequence data.☆38Jan 16, 2021Updated 5 years ago
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Nov 20, 2020Updated 5 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆11Mar 20, 2025Updated last year
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- ☆20Jan 18, 2022Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Nov 17, 2021Updated 4 years ago
- Percentile-normalization method for correcting batch effects in case-control studies☆12Oct 26, 2019Updated 6 years ago
- Python client for MyVariant.info web services.☆23Jan 14, 2025Updated last year
- Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …☆17Jun 28, 2023Updated 2 years ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 8 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 2 years ago
- ☆17Jan 14, 2026Updated 2 months ago
- Example chats from running BioMCP for demonstrations☆17Jun 20, 2025Updated 9 months ago
- ☆12Nov 23, 2020Updated 5 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated 5 months ago
- WIP : regular expressions for identifying and extracting values from HGVS nomenclature☆14Apr 15, 2018Updated 7 years ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 6 years ago
- A R package to create a minimal template for scientific manuscripts in .docx☆11Jan 15, 2022Updated 4 years ago
- Accessing AlphaMissense Data Resources in R☆13Nov 26, 2025Updated 3 months ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- Find bimodal, unimodal, and multimodal features in your data☆27Oct 26, 2018Updated 7 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆61Aug 30, 2022Updated 3 years ago
- Single-cell copy number calling and event history reconstruction.☆28Dec 21, 2024Updated last year
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 2 months ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 6 years ago
- An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵☆28Feb 20, 2026Updated last month
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Jan 30, 2026Updated last month
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Jul 24, 2017Updated 8 years ago
- Python bindings to minimap2☆16Sep 18, 2017Updated 8 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago