📈 DNA Sequence Visualization for Humans
☆41Jul 10, 2021Updated 5 years ago
Alternatives and similar repositories for squiggle
Users that are interested in squiggle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 5 months ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform☆17Dec 12, 2022Updated 3 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PPL (Pore-C PipLine) is a set of tools to process, evaluate and visualize the multi-way contacts experiment based on 3C and ONT long read…☆16Apr 22, 2025Updated last year
- robust matching of small variant datasets using flexible scoring schemes☆12Mar 26, 2020Updated 6 years ago
- Example chats from running BioMCP for demonstrations☆17Jun 20, 2025Updated last year
- Understand DNA structure and how machine learning can be used to work with DNA sequence data.☆42Jan 16, 2021Updated 5 years ago
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Nov 20, 2020Updated 5 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆12Jul 7, 2026Updated last month
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 9 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Nov 17, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Jul 30, 2020Updated 6 years ago
- Percentile-normalization method for correcting batch effects in case-control studies☆12Oct 26, 2019Updated 6 years ago
- Python client for MyVariant.info web services.☆23Jan 14, 2025Updated last year
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 9 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …☆17Jun 28, 2023Updated 3 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- Library for visualising genomic features in Python.☆16May 12, 2017Updated 9 years ago
- Burrows-Wheeler Aligner for x86,x86_64, arm and aarch64 architectures (PC, Raspberry PI, ODROID, M1)☆10Apr 13, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- How do we process data in different formats like docx, pdf etc and generate insights to be linked with structured data in database?This p…☆14May 27, 2020Updated 6 years ago
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated 10 months ago
- Single-cell copy number calling and event history reconstruction.☆28Updated this week
- ☆15Jun 17, 2026Updated 2 months ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 7 years ago
- WIP : regular expressions for identifying and extracting values from HGVS nomenclature☆14Apr 15, 2018Updated 8 years ago
- A R package to create a minimal template for scientific manuscripts in .docx☆11Jan 15, 2022Updated 4 years ago
- Accessing AlphaMissense Data Resources in R☆13Aug 14, 2026Updated 2 weeks ago
- Find bimodal, unimodal, and multimodal features in your data☆27Oct 26, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- comparative genome dot plot viewer☆10May 19, 2019Updated 7 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆60Aug 30, 2022Updated 4 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 7 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 7 months ago
- An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵☆28Jul 14, 2026Updated last month
- Automatic Arabic Text Summarization using Python☆12Jul 2, 2020Updated 6 years ago