📈 DNA Sequence Visualization for Humans
☆41Jul 10, 2021Updated 5 years ago
Alternatives and similar repositories for squiggle
Users that are interested in squiggle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- do multiple nucleotide sequence alignment fast and accurately☆18Dec 1, 2022Updated 3 years ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 7 months ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- PPL (Pore-C PipLine) is a set of tools to process, evaluate and visualize the multi-way contacts experiment based on 3C and ONT long read…☆16Apr 22, 2025Updated last year
- Example chats from running BioMCP for demonstrations☆18Jun 20, 2025Updated last year
- Accessing AlphaMissense Data Resources in R☆13Sep 7, 2026Updated last month
- robust matching of small variant datasets using flexible scoring schemes☆12Mar 26, 2020Updated 6 years ago
- Continuous administration of the Greene Lab's electronic scrum☆13Updated this week
- A lightweight Python graphing API for genomic features☆15Jul 8, 2022Updated 4 years ago
- This repository is retired software☆14Oct 29, 2015Updated 11 years ago
- Simple interval class for fast fasta access☆10Jun 18, 2012Updated 14 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- Explore and analyze biological sequence data☆19Aug 1, 2024Updated 2 years ago
- blast, shmlast☆21Oct 5, 2020Updated 6 years ago
- Creating virtual environments for R.☆17Oct 24, 2019Updated 7 years ago
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- ☆21Jan 18, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- a hidden Markov model to infer simple repeats from genome sequences☆39Feb 19, 2021Updated 5 years ago
- Copy number estimation of highly duplicated sequences☆12Aug 15, 2017Updated 9 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆25Oct 21, 2026Updated last week
- Percentile-normalization method for correcting batch effects in case-control studies☆12Oct 26, 2019Updated 7 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Jul 30, 2020Updated 6 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 11 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python client for MyVariant.info web services.☆23Jan 14, 2025Updated last year
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Nov 17, 2021Updated 4 years ago
- Analysis of large inversions using SNP data☆10Jul 29, 2025Updated last year
- Tutorials for diffxpy.☆11Nov 1, 2019Updated 7 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆57Mar 2, 2026Updated 8 months ago
- Metascape for Bioinformaticians (MSBio)☆14Jun 30, 2021Updated 5 years ago
- Utilities to manipulate pangenome collections using multi-MUMs☆20Sep 16, 2026Updated last month