π DNA Sequence Visualization for Humans
β41Jul 10, 2021Updated 5 years ago
Alternatives and similar repositories for squiggle
Users that are interested in squiggle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π― Generate DNA sequences with specified amino acid, codon, and k-mer frequenciesβ17Jan 23, 2023Updated 3 years ago
- Lab notebook for people who like the command line.β11Mar 6, 2026Updated 4 months ago
- do multiple nucleotide sequence alignment fast and accuratelyβ18Dec 1, 2022Updated 3 years ago
- A small library for ranges/intervals, for use with genomic data.β17Nov 27, 2012Updated 13 years ago
- Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platformβ17Dec 12, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- iFISH Probe Design: a Python3 package to build iFISH probes.β12Mar 11, 2022Updated 4 years ago
- π§¬π Turn DNA sequences into interactive visualizationsβ13Jan 20, 2023Updated 3 years ago
- PPL (Pore-C PipLine) is a set of tools to process, evaluate and visualize the multi-way contacts experiment based on 3C and ONT long readβ¦β16Apr 22, 2025Updated last year
- robust matching of small variant datasets using flexible scoring schemesβ12Mar 26, 2020Updated 6 years ago
- Spectral and reproducibility analysis of Hi-C contact mapsβ13Mar 18, 2021Updated 5 years ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.β12Jul 7, 2026Updated 2 weeks ago
- Copy number estimation of highly duplicated sequencesβ10Aug 15, 2017Updated 8 years ago
- β20Jan 18, 2022Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing dataβ22Nov 17, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data setsβ38Jul 30, 2020Updated 5 years ago
- Percentile-normalization method for correcting batch effects in case-control studiesβ12Oct 26, 2019Updated 6 years ago
- Python client for MyVariant.info web services.β23Jan 14, 2025Updated last year
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiationβ10Apr 20, 2017Updated 9 years ago
- Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype β¦β17Jun 28, 2023Updated 3 years ago
- GitHub Action to launch a workflow using Nextflow Tower.β12Mar 28, 2023Updated 3 years ago
- β12Nov 23, 2020Updated 5 years ago
- Automated PDF and text processing with Spacy and NLTK; information extraction from text based on grammatical structure; deployed on extraβ¦β16Apr 1, 2022Updated 4 years ago
- Library for visualising genomic features in Python.β16May 12, 2017Updated 9 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Single Cell RNA-seq UMI Filtering Facilitatorβ10Oct 6, 2025Updated 9 months ago
- Single-cell copy number calling and event history reconstruction.β28May 13, 2026Updated 2 months ago
- β15Jun 17, 2026Updated last month
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)β22Aug 28, 2019Updated 6 years ago
- WIP : regular expressions for identifying and extracting values from HGVS nomenclatureβ14Apr 15, 2018Updated 8 years ago
- A R package to create a minimal template for scientific manuscripts in .docxβ11Jan 15, 2022Updated 4 years ago
- Accessing AlphaMissense Data Resources in Rβ13Nov 26, 2025Updated 7 months ago
- Tools for handling HiC and 5C dataβ24Feb 5, 2024Updated 2 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq dataβ62Aug 30, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Detection of structural variants in cancer mate-pair and paired-end dataβ13May 3, 2019Updated 7 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.β19Jan 16, 2026Updated 6 months ago
- An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. π΅β28Jul 14, 2026Updated last week
- Automatic Arabic Text Summarization using Pythonβ12Jul 2, 2020Updated 6 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequencesβ24May 29, 2026Updated last month
- A list of inspirational and thought-provoking reads about women who code.β10Nov 20, 2025Updated 8 months ago
- A provenance library for bioinformatics workflows 𧬠π πβ14Jun 2, 2026Updated last month