neurodata / ndstore
code for storing neurodata images and image annotations
☆38Updated 7 years ago
Alternatives and similar repositories for ndstore:
Users that are interested in ndstore are comparing it to the libraries listed below
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- Datasets☆26Updated 9 years ago
- Image pyramid reader and writer enhanced with bio-formats library reader☆13Updated last year
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆45Updated 2 months ago
- python interface to neurodata code☆18Updated 5 years ago
- CLIJ is deprecated. Visit CLIJ2☆56Updated 3 years ago
- Web based Image Viewer developed @ Center for Advanced Imaging [University of Queensland]☆19Updated last year
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆25Updated 10 months ago
- Render transformed image tiles☆34Updated this week
- Adaptive Platform for Neuroscience Experiments☆40Updated 2 months ago
- Fiji website☆37Updated last month
- The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underl…☆20Updated 8 years ago
- Python SDK for interacting with the BossDB REST API☆21Updated last week
- Create 3D/4D animations using a natural language-based syntax☆59Updated 2 years ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆27Updated 6 years ago
- benchmarking challenge for finding neurons in imaging data☆73Updated 6 years ago
- This repository hosts the NeuroML 2 Schema, the ComponentType definitions in LEMS and the core documentation of NeuroML2.☆56Updated 2 months ago
- Legacy project superseded by https://github.com/morphonets/SNT☆11Updated 3 years ago
- scripts for using spark on janelia's cluster☆13Updated last year
- Code for real-time, low-latency processing of 2P calcium imaging data streaming from PrairieView☆11Updated 4 years ago
- Documentations of BigNeuron Project progress☆24Updated 9 years ago
- www.vaa3d.org☆78Updated 7 years ago
- GPU accelerated image/volume processing in Python☆111Updated this week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆47Updated this week
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆15Updated last year
- Fiji plugins for starting BigDataViewer and exporting data.☆21Updated 6 months ago
- This package provides Python libNeuroML, for working with neuronal models specified in NeuroML☆40Updated 3 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 9 months ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Updated 3 years ago
- Block-wise task scheduling for large nD volumes.☆30Updated 3 weeks ago