neurodata / ndstoreLinks
code for storing neurodata images and image annotations
☆38Updated 7 years ago
Alternatives and similar repositories for ndstore
Users that are interested in ndstore are comparing it to the libraries listed below
Sorting:
- scripts for using spark on janelia's cluster☆13Updated last year
- Block-wise task scheduling for large nD volumes.☆30Updated 3 months ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Updated last year
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated this week
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated this week
- Python SDK for interacting with the BossDB REST API☆22Updated 2 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆49Updated last week
- Render transformed image tiles☆34Updated this week
- ☆36Updated this week
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆19Updated 2 months ago
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆45Updated 4 months ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆27Updated 6 years ago
- Datasets☆26Updated 10 years ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Updated 3 years ago
- NeuroDataViz: Web visualization and analysis for neuroimaging datasets. Powered by Neuroglancer.☆9Updated 7 years ago
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated 2 months ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- Documentations of BigNeuron Project progress☆24Updated 9 years ago
- Web based Image Viewer developed @ Center for Advanced Imaging [University of Queensland]☆19Updated 2 years ago
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Updated 3 years ago
- Adaptive Platform for Neuroscience Experiments☆40Updated 2 weeks ago
- Read and write Neuroglancer datasets programmatically.☆154Updated 2 weeks ago
- CLIJ is deprecated. Visit CLIJ2☆56Updated 4 years ago
- ImgLib2-based viewer for registered SPIM stacks and more☆40Updated last week
- Code for real-time, low-latency processing of 2P calcium imaging data streaming from PrairieView☆11Updated 4 years ago
- Create 3D/4D animations using a natural language-based syntax☆60Updated 3 weeks ago
- A python script editor plugin for napari☆11Updated last year
- python interface to neurodata code☆18Updated 5 years ago
- A library to facilitate machine learning on multi-dimensional images.☆83Updated last week
- ☆12Updated this week