neurodata / ndstoreLinks
code for storing neurodata images and image annotations
☆38Updated 7 years ago
Alternatives and similar repositories for ndstore
Users that are interested in ndstore are comparing it to the libraries listed below
Sorting:
- scripts for using spark on janelia's cluster☆13Updated last year
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆46Updated 7 months ago
- Python SDK for interacting with the BossDB REST API☆22Updated 5 months ago
- Software package for neuron reconstruction and visualization☆39Updated 3 months ago
- Read and write Neuroglancer datasets programmatically.☆157Updated this week
- CLIJ is deprecated. Visit CLIJ2☆56Updated 4 years ago
- Collaborative Annotation Toolkit for Massive Amounts of Image Data☆196Updated this week
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆24Updated last week
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆27Updated 7 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Updated last year
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆53Updated this week
- Block-wise task scheduling for large nD volumes.☆32Updated 5 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆19Updated 2 weeks ago
- A library to facilitate machine learning on multi-dimensional images.☆86Updated this week
- Not HDF5☆187Updated last week
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Updated 3 years ago
- benchmarking challenge for finding neurons in imaging data☆74Updated 6 years ago
- Visualize, share and annotate your large 3D images online☆157Updated this week
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Updated 10 months ago
- WebGL-based viewer for volumetric data☆24Updated this week
- Interactive notebooks for trying analyses and exploring datasets☆32Updated 10 years ago
- python interface to neurodata code☆18Updated 6 years ago
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆55Updated 3 months ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Updated 4 years ago
- GPU accelerated image/volume processing in Python☆111Updated 5 months ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated last month
- EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.☆19Updated 3 years ago
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆76Updated this week