openMetadataInitiative / openMINDS_SANDSLinks
A metadata model capturing Spatial Anchoring of Neuroscience Data Structures, including brain atlas definitions.
☆13Updated 3 weeks ago
Alternatives and similar repositories for openMINDS_SANDS
Users that are interested in openMINDS_SANDS are comparing it to the libraries listed below
Sorting:
- ☆26Updated last month
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated 3 weeks ago
- Python client interface for EBRAINS Collaboratory Drive (Seafile) and Bucket (data-proxy) storage☆10Updated 3 weeks ago
- A draft specification for the nifti-zarr format☆16Updated 3 weeks ago
- Conversion of neuroimaging data for display in Neuroglancer☆31Updated 3 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- Segmentation of anatomical structures in a common coordinate space☆34Updated 3 weeks ago
- The openMINDS core metadata model includes schemas that can be used to describe the general origin, location and content of research prod…☆23Updated 2 weeks ago
- Loading and saving of image data.☆10Updated last year
- Visualise brainreg registration output☆10Updated 4 years ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Updated last year
- High-level Python API for the EBRAINS Knowledge Graph☆12Updated last week
- openMINDS comprises a set of metadata models for research products in the field of neuroscience.☆43Updated 2 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated 3 weeks ago
- Brainways☆22Updated 4 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆26Updated 3 weeks ago
- NIU website on common software problems and their troubleshooting☆10Updated last month
- CloudReg☆11Updated last year
- Interactive Python course for using the Neurodata Without Borders format☆15Updated 6 years ago
- Brain flatmaps generation☆11Updated 3 years ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated 2 months ago
- 3D/4D volumetric rendering of microscopy data☆26Updated last month
- Analyze neuroscience data in the cloud☆19Updated last year
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 5 years ago
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆13Updated last week
- Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.☆51Updated 2 weeks ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- Build unbiased anatomical templates from individual images☆12Updated this week
- Tool to help inspect NWB files for compliance with NWB Best Practices☆21Updated this week