khuranalab / FunSeq2_DCLinks
a modified version of FunSeq2 using new data context
☆15Updated 3 years ago
Alternatives and similar repositories for FunSeq2_DC
Users that are interested in FunSeq2_DC are comparing it to the libraries listed below
Sorting:
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 5 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆12Updated 5 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- ☆17Updated 3 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 11 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- Materials presented at the BiocNYC meet-up☆12Updated 6 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Code to run OncoSig Analyses☆18Updated 4 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- ☆12Updated last year
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆26Updated last year
- Comprehensive Human Expressed SequenceS☆18Updated 2 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Explore the cancer relevance of your gene list☆52Updated last week
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆15Updated this week
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 5 months ago
- Python function for TMB snake plots☆16Updated 5 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- JEME method for predicting enhancer targets☆11Updated 8 years ago